Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002045A_C03 KMC002045A_c03
(1369 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_197314.1| putative protein; protein id: At5g18130.1, supp... 60 2e-16
gb|AAM63195.1| unknown [Arabidopsis thaliana] 55 2e-14
ref|NP_566215.1| expressed protein; protein id: At3g03870.1, sup... 53 1e-13
gb|AAL87288.1| unknown protein [Arabidopsis thaliana] 53 7e-07
pir||T28897 hypothetical protein T17H7.5 - Caenorhabditis elegans 36 1.6
>ref|NP_197314.1| putative protein; protein id: At5g18130.1, supported by cDNA: 10299.,
supported by cDNA: gi_14532801, supported by cDNA:
gi_19310744 [Arabidopsis thaliana]
gi|9758895|dbj|BAB09471.1|
gb|AAF00631.1~gene_id:MRG7.9~similar to unknown protein
[Arabidopsis thaliana] gi|14532802|gb|AAK64182.1| unknown
protein [Arabidopsis thaliana] gi|19310745|gb|AAL85103.1|
unknown protein [Arabidopsis thaliana]
Length = 280
Score = 60.5 bits (145), Expect(3) = 2e-16
Identities = 63/223 (28%), Positives = 95/223 (42%), Gaps = 29/223 (13%)
Frame = -1
Query: 1273 DWVLLSDDG----SLDGGDENQIFLGKSNPESKSDFDMNYFYCTSPKSRDSSTTQLLHD- 1109
DW +L LD G E + K + FD +YF C P T+ LH
Sbjct: 5 DWEILPKINYKGLELDLGHEEDHEVTKMMRNTAKSFDSDYFIC--PIQDSVGKTEFLHQR 62
Query: 1108 ---------------DPIQFVENTEDDHVGDNSDTTSEKIKAVVVEADEQETLSVSQFFL 974
+P+ V+ + DH SE ++ E+ ++ F
Sbjct: 63 SSVVPTQLLQIPITWEPLSPVD--DKDHNKYLDPDFSEPDPELLTESFPSPRIT---FKK 117
Query: 973 QLENKFADMKMDSPKSSPRVLFPPPLDAGALKFEDK-----GEAMEVMVSPRRKVENEMA 809
E +FADMK+DSP + F PL + D GE+ + ++ + ++++
Sbjct: 118 SKETEFADMKIDSPAAR----FTSPLPQNDERHSDSEGGLGGESYDEIMGSEVEESSDLS 173
Query: 808 TMDCDREEVDPTDG--FNFWKWSLTGVGAICSFGV--AAATIC 692
+ ++EVD +G N WK L G+GAICSFGV AAATIC
Sbjct: 174 S----KKEVDWDEGERTNLWKKGLNGIGAICSFGVAAAAATIC 212
Score = 34.3 bits (77), Expect(3) = 2e-16
Identities = 19/39 (48%), Positives = 27/39 (68%), Gaps = 1/39 (2%)
Frame = -2
Query: 678 GSQQKNQFHQNHKIQFQIYTDD-QRIKPVVQQATQLNEA 565
G + KNQ ++FQIY+DD +R+ VV+ AT+LNEA
Sbjct: 224 GGRNKNQI-----LRFQIYSDDNKRMNEVVKHATKLNEA 257
Score = 33.9 bits (76), Expect(3) = 2e-16
Identities = 12/23 (52%), Positives = 20/23 (86%)
Frame = -3
Query: 563 IAATRGIPLSRAHITYGGYYEAL 495
I+ +G+P++RA I++GGYY+AL
Sbjct: 258 ISVMKGLPVARAQISFGGYYDAL 280
>gb|AAM63195.1| unknown [Arabidopsis thaliana]
Length = 235
Score = 55.1 bits (131), Expect(3) = 2e-14
Identities = 54/182 (29%), Positives = 83/182 (44%), Gaps = 21/182 (11%)
Frame = -1
Query: 1174 MNYFYCTS-----PKSRDSSTTQLLHDDPIQF------VENTEDDHVGDNSDTTSEKIKA 1028
M+YF C S PK+ ++++ +Q V + ++ + +N D +
Sbjct: 1 MDYFLCPSTKDPLPKTESPPRSKVVPKKILQVPIAWEAVLDQDNTKIPNNPDLEPDPHP- 59
Query: 1027 VVVEADEQETLSVSQ-------FFLQLENKFADMKMDSPKSSPRVLFP-PPLDAGALKFE 872
+ D + TLS F + + +FADMK+D P R+ P P +DA A K
Sbjct: 60 ---DPDSKPTLSTDSVSSPRVSFKIMKDTEFADMKIDPPA---RITSPLPQIDAAASKPS 113
Query: 871 DKGEAMEVMVSPRRKVENEMATMDCDREEVDPTDGFNFWKWSLTGVGAICSFGV--AAAT 698
D +E R K E ++ + E+ + N WK L G+GAICSFGV AAAT
Sbjct: 114 D----LEGGDDLRDKKE---VVLEEEDEDGSGGERLNLWKAGLNGIGAICSFGVAAAAAT 166
Query: 697 IC 692
+C
Sbjct: 167 VC 168
Score = 38.1 bits (87), Expect(3) = 2e-14
Identities = 19/37 (51%), Positives = 28/37 (75%), Gaps = 1/37 (2%)
Frame = -2
Query: 654 HQNHKIQFQIYTDD-QRIKPVVQQATQLNEANCGNQG 547
++N ++FQIY+DD +R+K VV AT+LNEA G +G
Sbjct: 182 NKNQMLRFQIYSDDNKRMKEVVNHATKLNEAIFGMKG 218
Score = 28.5 bits (62), Expect(3) = 2e-14
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = -3
Query: 563 IAATRGIPLSRAHITYGGYYEAL 495
I +G+P+ RA I++GG+Y+ L
Sbjct: 213 IFGMKGVPVVRAQISFGGHYDGL 235
>ref|NP_566215.1| expressed protein; protein id: At3g03870.1, supported by cDNA: 20442.
[Arabidopsis thaliana]
gi|6006855|gb|AAF00631.1|AC009540_8 hypothetical protein
[Arabidopsis thaliana]
Length = 266
Score = 52.8 bits (125), Expect(3) = 1e-13
Identities = 53/182 (29%), Positives = 82/182 (44%), Gaps = 21/182 (11%)
Frame = -1
Query: 1174 MNYFYCTS-----PKSRDSSTTQLLHDDPIQF------VENTEDDHVGDNSDTTSEKIKA 1028
M+YF C S PK+ ++++ +Q V + ++ + +N D +
Sbjct: 32 MDYFLCPSTKDPLPKTESPPRSKVVPKKILQVPIAWEAVLDQDNTKIPNNPDLEPDPHP- 90
Query: 1027 VVVEADEQETLSVSQ-------FFLQLENKFADMKMDSPKSSPRVLFP-PPLDAGALKFE 872
+ D + TLS F + + +FADMK+D P R+ P P +D A K
Sbjct: 91 ---DPDSKPTLSTDSVSSPRVSFKIMKDTEFADMKIDPPA---RITSPLPQIDDAASKPS 144
Query: 871 DKGEAMEVMVSPRRKVENEMATMDCDREEVDPTDGFNFWKWSLTGVGAICSFGV--AAAT 698
D +E R K E ++ + E+ + N WK L G+GAICSFGV AAAT
Sbjct: 145 D----LEGGDDLRDKKE---VVLEEEDEDGSGGERLNLWKAGLNGIGAICSFGVAAAAAT 197
Query: 697 IC 692
+C
Sbjct: 198 VC 199
Score = 38.1 bits (87), Expect(3) = 1e-13
Identities = 19/37 (51%), Positives = 28/37 (75%), Gaps = 1/37 (2%)
Frame = -2
Query: 654 HQNHKIQFQIYTDD-QRIKPVVQQATQLNEANCGNQG 547
++N ++FQIY+DD +R+K VV AT+LNEA G +G
Sbjct: 213 NKNQMLRFQIYSDDNKRMKEVVNHATKLNEAIFGMKG 249
Score = 28.5 bits (62), Expect(3) = 1e-13
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = -3
Query: 563 IAATRGIPLSRAHITYGGYYEAL 495
I +G+P+ RA I++GG+Y+ L
Sbjct: 244 IFGMKGVPVVRAQISFGGHYDGL 266
>gb|AAL87288.1| unknown protein [Arabidopsis thaliana]
Length = 234
Score = 52.8 bits (125), Expect(2) = 7e-07
Identities = 53/182 (29%), Positives = 82/182 (44%), Gaps = 21/182 (11%)
Frame = -1
Query: 1174 MNYFYCTS-----PKSRDSSTTQLLHDDPIQF------VENTEDDHVGDNSDTTSEKIKA 1028
M+YF C S PK+ ++++ +Q V + ++ + +N D +
Sbjct: 32 MDYFLCPSTKDPLPKTESPPRSKVVPKKILQVPIAWEAVLDQDNTKIPNNPDLEPDPHP- 90
Query: 1027 VVVEADEQETLSVSQ-------FFLQLENKFADMKMDSPKSSPRVLFP-PPLDAGALKFE 872
+ D + TLS F + + +FADMK+D P R+ P P +D A K
Sbjct: 91 ---DPDSKPTLSTDSVSSPRVSFKIMKDTEFADMKIDPPA---RITSPLPQIDDAASKPS 144
Query: 871 DKGEAMEVMVSPRRKVENEMATMDCDREEVDPTDGFNFWKWSLTGVGAICSFGV--AAAT 698
D +E R K E ++ + E+ + N WK L G+GAICSFGV AAAT
Sbjct: 145 D----LEGGDDLRDKKE---VVLEEEDEDGSGGERLNLWKAGLNGIGAICSFGVAAAAAT 197
Query: 697 IC 692
+C
Sbjct: 198 VC 199
Score = 23.9 bits (50), Expect(2) = 7e-07
Identities = 7/17 (41%), Positives = 14/17 (82%)
Frame = -2
Query: 654 HQNHKIQFQIYTDDQRI 604
++N ++FQIY+DD ++
Sbjct: 213 NKNQMLRFQIYSDDNKV 229
>pir||T28897 hypothetical protein T17H7.5 - Caenorhabditis elegans
Length = 1001
Score = 35.8 bits (81), Expect = 1.6
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = +1
Query: 1162 RSNSCQNHFLILGLIFPGKSDSHHHHQGSHHQKGAPNH**YPSSP 1296
RS+ + I+ I P SHHHHQ HQ+ P YPS P
Sbjct: 413 RSHGMTSPVPIMESISPQPQVSHHHHQPQQHQQHQPQQQYYPSPP 457
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,250,815,142
Number of Sequences: 1393205
Number of extensions: 30026851
Number of successful extensions: 91135
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 79795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89724
length of database: 448,689,247
effective HSP length: 127
effective length of database: 271,752,212
effective search space used: 89134725536
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
