Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002041A_C01 KMC002041A_c01
(583 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_181573.1| unknown protein; protein id: At2g40420.1 [Arabi... 42 0.004
ref|NP_191179.1| putative protein; protein id: At3g56200.1, supp... 42 0.006
dbj|BAB19353.1| hypothetical protein [Oryza sativa (japonica cul... 35 0.52
ref|NP_499693.1| Dehydrogenase E1 component (54.9 kD) [Caenorhab... 35 0.68
ref|NP_198698.1| transporter -like protein; protein id: At5g3882... 31 9.9
>ref|NP_181573.1| unknown protein; protein id: At2g40420.1 [Arabidopsis thaliana]
gi|25408697|pir||C84829 hypothetical protein At2g40420
[imported] - Arabidopsis thaliana
gi|20198010|gb|AAM15348.1| unknown protein [Arabidopsis
thaliana]
Length = 415
Score = 42.4 bits (98), Expect = 0.004
Identities = 20/26 (76%), Positives = 24/26 (91%)
Frame = -3
Query: 581 RDKIVALVMIILAVVTSVIAISTNIY 504
R+KIVA VM++LAV TS+IAISTNIY
Sbjct: 382 REKIVASVMLVLAVATSIIAISTNIY 407
>ref|NP_191179.1| putative protein; protein id: At3g56200.1, supported by cDNA:
gi_20453044 [Arabidopsis thaliana]
gi|11357534|pir||T47737 hypothetical protein F18O21.160
- Arabidopsis thaliana gi|7572918|emb|CAB87419.1|
putative protein [Arabidopsis thaliana]
gi|20453045|gb|AAM19768.1| AT3g56200/F18O21_160
[Arabidopsis thaliana]
Length = 435
Score = 42.0 bits (97), Expect = 0.006
Identities = 18/27 (66%), Positives = 25/27 (91%)
Frame = -3
Query: 581 RDKIVALVMIILAVVTSVIAISTNIYN 501
R+KIVA +M++LAV TS+IAISTN+Y+
Sbjct: 405 REKIVAAIMLVLAVATSIIAISTNLYS 431
>dbj|BAB19353.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 448
Score = 35.4 bits (80), Expect = 0.52
Identities = 14/32 (43%), Positives = 26/32 (80%)
Frame = -3
Query: 578 DKIVALVMIILAVVTSVIAISTNIYNAFSSKS 483
DKI+++ MI+LA+V++V+A+ ++ Y+ F KS
Sbjct: 412 DKILSIFMIVLAIVSNVVAVYSDAYSMFHRKS 443
>ref|NP_499693.1| Dehydrogenase E1 component (54.9 kD) [Caenorhabditis elegans]
gi|7509702|pir||T26758 hypothetical protein Y39E4A.3 -
Caenorhabditis elegans gi|3880881|emb|CAA16329.1|
Hypothetical protein Y39E4A.3 [Caenorhabditis elegans]
Length = 478
Score = 35.0 bits (79), Expect = 0.68
Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 6/64 (9%)
Frame = +2
Query: 170 YIAILFKIYEFYNKQDIQKNTVQHKRQSKQMRL-----EMSFLPFTPPPLINLP-TKGRV 331
Y ++ F I+ ++ + +QK TV H+++ +QM + E +F+ + P LP G
Sbjct: 191 YFSVFFSIFLHFDSRILQKKTVPHRKRGRQMPMHFGTKERNFVTISSPLTTQLPQAVGSA 250
Query: 332 YVWK 343
Y +K
Sbjct: 251 YAFK 254
>ref|NP_198698.1| transporter -like protein; protein id: At5g38820.1 [Arabidopsis
thaliana]
Length = 456
Score = 31.2 bits (69), Expect = 9.9
Identities = 14/29 (48%), Positives = 21/29 (72%)
Frame = -3
Query: 581 RDKIVALVMIILAVVTSVIAISTNIYNAF 495
RDK +A+ MI+LAV ++ IAI ++ Y F
Sbjct: 419 RDKTIAICMIVLAVFSNAIAIYSDAYALF 447
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 512,326,421
Number of Sequences: 1393205
Number of extensions: 11204814
Number of successful extensions: 28512
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 27201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28494
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21712003912
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
