Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002037A_C02 KMC002037A_c02
(754 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_566322.1| F-box protein family; protein id: At3g07870.1, ... 38 0.14
ref|NP_192993.1| F-box protein family; protein id: At4g12560.1 [... 37 0.23
emb|CAC33011.1| S locus F-box (SLF)-S2-like protein [Antirrhinum... 35 1.2
ref|NP_189030.1| F-box protein family; protein id: At3g23880.1 [... 35 1.2
ref|NP_193970.1| putative protein; protein id: At4g22390.1 [Arab... 34 2.0
>ref|NP_566322.1| F-box protein family; protein id: At3g07870.1, supported by cDNA:
gi_15983478 [Arabidopsis thaliana]
gi|6648199|gb|AAF21197.1|AC013483_21 unknown protein
[Arabidopsis thaliana]
gi|15983479|gb|AAL11607.1|AF424614_1 AT3g07870/F17A17_21
[Arabidopsis thaliana]
Length = 417
Score = 38.1 bits (87), Expect = 0.14
Identities = 16/42 (38%), Positives = 25/42 (59%)
Frame = -1
Query: 727 LNKKSYSLGGMRGFLGVCCIGYHGLAEIWIMKEYKVRSSWTK 602
LN+ ++ L ++G L G +G +IW+MK Y V+ SW K
Sbjct: 283 LNRTNHRLVNLKGCLCAVVYGNYGKLDIWVMKTYGVKESWGK 324
>ref|NP_192993.1| F-box protein family; protein id: At4g12560.1 [Arabidopsis
thaliana] gi|7487230|pir||T07648 hypothetical protein
T1P17.150 - Arabidopsis thaliana
gi|4725955|emb|CAB41726.1| putative protein [Arabidopsis
thaliana] gi|7267958|emb|CAB78299.1| putative protein
[Arabidopsis thaliana]
Length = 408
Score = 37.4 bits (85), Expect = 0.23
Identities = 15/36 (41%), Positives = 22/36 (60%)
Frame = -1
Query: 706 LGGMRGFLGVCCIGYHGLAEIWIMKEYKVRSSWTKI 599
+G + G L + C ++W+MKEY VR SWTK+
Sbjct: 265 IGVLDGCLCLMCNYDQSYVDVWMMKEYNVRDSWTKV 300
>emb|CAC33011.1| S locus F-box (SLF)-S2-like protein [Antirrhinum hispanicum]
Length = 376
Score = 35.0 bits (79), Expect = 1.2
Identities = 30/99 (30%), Positives = 44/99 (44%), Gaps = 2/99 (2%)
Frame = -1
Query: 655 LAEIWIMKEYKVRSSWTKIVLFAHDIPRTSGFFPICFTQPGRCFWNE*AWEVIETRR*RK 476
L +IW+MK+Y VR SWTK + P+ +C W ++E +
Sbjct: 288 LFDIWVMKQYGVRESWTKQYVIG---PQVVVCSHVC--------WKSDECLIVEDGNGQL 336
Query: 475 AACSLRPGDRQILVYYIVVCIQRVYC--HSLVSLRTNRV 365
+C+ R + + L Y V RV SL+SL NRV
Sbjct: 337 VSCAFRTNEIKKLPIYAVEETLRVLIVDESLISL--NRV 373
>ref|NP_189030.1| F-box protein family; protein id: At3g23880.1 [Arabidopsis
thaliana] gi|9294656|dbj|BAB03005.1|
gb|AAF30317.1~gene_id:F14O13.6~similar to unknown
protein [Arabidopsis thaliana]
gi|26449693|dbj|BAC41970.1| unknown protein [Arabidopsis
thaliana]
Length = 364
Score = 35.0 bits (79), Expect = 1.2
Identities = 14/38 (36%), Positives = 24/38 (62%)
Frame = -1
Query: 709 SLGGMRGFLGVCCIGYHGLAEIWIMKEYKVRSSWTKIV 596
+LG +RG L + C A++W+MKE+ SW+K++
Sbjct: 262 TLGDLRGCLSMVCYCKGANADVWVMKEFGEVYSWSKLL 299
>ref|NP_193970.1| putative protein; protein id: At4g22390.1 [Arabidopsis thaliana]
gi|25407584|pir||D85256 hypothetical protein AT4g22390
[imported] - Arabidopsis thaliana
gi|5738370|emb|CAB52813.1| putative protein [Arabidopsis
thaliana] gi|7269085|emb|CAB79194.1| putative protein
[Arabidopsis thaliana]
Length = 394
Score = 34.3 bits (77), Expect = 2.0
Identities = 15/60 (25%), Positives = 31/60 (51%)
Frame = -1
Query: 706 LGGMRGFLGVCCIGYHGLAEIWIMKEYKVRSSWTKIVLFAHDIPRTSGFFPICFTQPGRC 527
+G + G + + C + ++W++KEY+ SWTK+ + +P+ + F +P C
Sbjct: 261 IGVLDGCVCLMCYDEYSHVDVWVLKEYEDYKSWTKL----YRVPKPESVESVEFIRPLIC 316
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 621,523,450
Number of Sequences: 1393205
Number of extensions: 13445154
Number of successful extensions: 35589
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 34119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35525
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 36595604110
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
