Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002031A_C04 KMC002031A_c04
(649 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P29463|CPTR_SOLTU TRIOSE PHOSPHATE/PHOSPHATE TRANSLOCATOR, CH... 181 7e-45
sp|P21727|CPTR_PEA TRIOSE PHOSPHATE/PHOSPHATE TRANSLOCATOR, CHLO... 181 1e-44
sp|P49132|CPTR_FLATR Triose phosphate/phosphate translocator, ch... 180 1e-44
pir||S34829 triose phosphate/3-phosphoglycerate/phosphate transl... 179 2e-44
sp|P52177|CPT1_BRAOL TRIOSE PHOSPHATE/PHOSPHATE TRANSLOCATOR, CH... 178 5e-44
>sp|P29463|CPTR_SOLTU TRIOSE PHOSPHATE/PHOSPHATE TRANSLOCATOR, CHLOROPLAST PRECURSOR
(CTPT) (E29) gi|100465|pir||S23224 triose
phosphate/3-phosphoglycerate/phosphate translocator
precursor - potato gi|21587|emb|CAA47430.1| triose
phosphate translocator [Solanum tuberosum]
Length = 414
Score = 181 bits (459), Expect = 7e-45
Identities = 89/99 (89%), Positives = 94/99 (94%)
Frame = -3
Query: 647 EGPVLLKHGFNDAIAKVGLVKFVTDLFWVGMFYHLYNQVATNTLERVAPLTHAVGNVLKR 468
EGP LL+HGFNDAIAKVGL KFVTDLFWVGMFYHLYNQVATNTLERVAPLTHAVGNVLKR
Sbjct: 305 EGPQLLQHGFNDAIAKVGLTKFVTDLFWVGMFYHLYNQVATNTLERVAPLTHAVGNVLKR 364
Query: 467 VFVIGFSIIIFGNRISTPTGIGTAIAIAGVAIYSLIQAQ 351
VFVIGFSI+IFGN+IST TGIGT IAIAGVAIYS I+A+
Sbjct: 365 VFVIGFSIVIFGNKISTQTGIGTCIAIAGVAIYSFIKAK 403
>sp|P21727|CPTR_PEA TRIOSE PHOSPHATE/PHOSPHATE TRANSLOCATOR, CHLOROPLAST PRECURSOR
(CTPT) (P36) (E30) gi|100071|pir||S23774 triose
phosphate/3-phosphoglycerate/phosphate translocator
precursor - garden pea gi|20691|emb|CAA38451.1|
chloroplast import receptor p36 [Pisum sativum]
gi|20853|emb|CAA48210.1| phosphate translocator [Pisum
sativum] gi|228551|prf||1805409A phosphate translocator
Length = 402
Score = 181 bits (458), Expect(2) = 1e-44
Identities = 90/99 (90%), Positives = 94/99 (94%)
Frame = -3
Query: 647 EGPVLLKHGFNDAIAKVGLVKFVTDLFWVGMFYHLYNQVATNTLERVAPLTHAVGNVLKR 468
EGP LLK GFNDAIAKVGLVKFV+DLFWVGMFYHLYNQVATNTLERVAPLTHAVGNVLKR
Sbjct: 293 EGPTLLKTGFNDAIAKVGLVKFVSDLFWVGMFYHLYNQVATNTLERVAPLTHAVGNVLKR 352
Query: 467 VFVIGFSIIIFGNRISTPTGIGTAIAIAGVAIYSLIQAQ 351
VFVIGFSIIIFGN+IST TGIGT IAIAGVA+YS I+AQ
Sbjct: 353 VFVIGFSIIIFGNKISTQTGIGTGIAIAGVALYSFIKAQ 391
Score = 21.6 bits (44), Expect(2) = 1e-44
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = -1
Query: 358 KPRIEEEKRQATSS 317
K +IEEEKRQA ++
Sbjct: 389 KAQIEEEKRQAKAA 402
>sp|P49132|CPTR_FLATR Triose phosphate/phosphate translocator, chloroplast precursor
(CTPT) gi|480962|pir||S37550 triose
phosphate/3-phosphoglycerate/phosphate translocator -
Flaveria trinervia gi|406281|emb|CAA81385.1| triose
phosphate/phosphate translocator [Flaveria trinervia]
Length = 407
Score = 180 bits (457), Expect(2) = 1e-44
Identities = 86/99 (86%), Positives = 96/99 (96%)
Frame = -3
Query: 647 EGPVLLKHGFNDAIAKVGLVKFVTDLFWVGMFYHLYNQVATNTLERVAPLTHAVGNVLKR 468
EGP LLKHGFNDAIAKVG++KF++DLFWVGMFYHLYNQ+ATNTLERVAPLTHAVGNVLKR
Sbjct: 298 EGPQLLKHGFNDAIAKVGMIKFISDLFWVGMFYHLYNQIATNTLERVAPLTHAVGNVLKR 357
Query: 467 VFVIGFSIIIFGNRISTPTGIGTAIAIAGVAIYSLIQAQ 351
VFVIGFSII+FGN+IST T IGT+IAIAGVAIYSLI+A+
Sbjct: 358 VFVIGFSIIVFGNKISTQTAIGTSIAIAGVAIYSLIKAR 396
Score = 21.6 bits (44), Expect(2) = 1e-44
Identities = 10/16 (62%), Positives = 12/16 (74%)
Frame = -1
Query: 364 LSKPRIEEEKRQATSS 317
L K RIEEEKR+ S+
Sbjct: 392 LIKARIEEEKRRMKSA 407
>pir||S34829 triose phosphate/3-phosphoglycerate/phosphate translocator - potato
Length = 414
Score = 179 bits (455), Expect = 2e-44
Identities = 88/99 (88%), Positives = 94/99 (94%)
Frame = -3
Query: 647 EGPVLLKHGFNDAIAKVGLVKFVTDLFWVGMFYHLYNQVATNTLERVAPLTHAVGNVLKR 468
EGP LL+HGFNDAIA+VGL KFVTDLFWVGMFYHLYNQVATNTLERVAPLTHAVGNVLKR
Sbjct: 305 EGPQLLQHGFNDAIAQVGLTKFVTDLFWVGMFYHLYNQVATNTLERVAPLTHAVGNVLKR 364
Query: 467 VFVIGFSIIIFGNRISTPTGIGTAIAIAGVAIYSLIQAQ 351
VFVIGFSI+IFGN+IST TGIGT IAIAGVAIYS I+A+
Sbjct: 365 VFVIGFSIVIFGNKISTQTGIGTCIAIAGVAIYSFIKAK 403
>sp|P52177|CPT1_BRAOL TRIOSE PHOSPHATE/PHOSPHATE TRANSLOCATOR, CHLOROPLAST PRECURSOR
(CTPT) gi|7488594|pir||T14436 triose
phosphate/3-phosphoglycerate/phosphate translocator
precursor - wild cabbage gi|1143709|gb|AAA84890.1|
chloroplast phosphate/triose-phosphate translocator
precursor
Length = 407
Score = 178 bits (452), Expect = 5e-44
Identities = 85/99 (85%), Positives = 95/99 (95%)
Frame = -3
Query: 647 EGPVLLKHGFNDAIAKVGLVKFVTDLFWVGMFYHLYNQVATNTLERVAPLTHAVGNVLKR 468
EGP LLKHGFNDAIAKVG+ KF++DLFWVGMFYHLYNQ+ATNTLERVAPLTHAVGNVLKR
Sbjct: 298 EGPQLLKHGFNDAIAKVGMTKFISDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKR 357
Query: 467 VFVIGFSIIIFGNRISTPTGIGTAIAIAGVAIYSLIQAQ 351
VFVIGFSI+IFGN+IST TGIGT IAIAGVA+YS+I+A+
Sbjct: 358 VFVIGFSIVIFGNKISTQTGIGTGIAIAGVALYSVIKAK 396
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 596,834,643
Number of Sequences: 1393205
Number of extensions: 13705930
Number of successful extensions: 58050
Number of sequences better than 10.0: 100
Number of HSP's better than 10.0 without gapping: 56035
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57950
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27576232529
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
