Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002030A_C03 KMC002030A_c03
(591 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_192019.1| mitochondrial carrier protein family; protein i... 121 8e-27
ref|NP_595952.1| putative mitochondrial carrier protein [Schizos... 64 2e-09
pir||T39385 probable mitochondrial carrier protein - fission yea... 62 4e-09
emb|CAC18152.2| related to peroxisomal Ca-dependent solute carri... 60 3e-08
dbj|BAB55368.1| unnamed protein product [Homo sapiens] 54 2e-06
>ref|NP_192019.1| mitochondrial carrier protein family; protein id: At4g01100.1,
supported by cDNA: gi_13430511, supported by cDNA:
gi_15724289, supported by cDNA: gi_15810608 [Arabidopsis
thaliana] gi|7441719|pir||T01729 mitochondrial solute
carrier protein homolog - Arabidopsis thaliana
gi|2191150|gb|AAB61037.1| similar to mitochondrial
carrier family [Arabidopsis thaliana]
gi|7267607|emb|CAB80919.1| putative carrier protein
[Arabidopsis thaliana]
gi|13430512|gb|AAK25878.1|AF360168_1 putative carrier
protein [Arabidopsis thaliana]
gi|15724290|gb|AAL06538.1|AF412085_1 AT4g01100/F2N1_16
[Arabidopsis thaliana] gi|15810609|gb|AAL07192.1|
putative carrier protein [Arabidopsis thaliana]
Length = 352
Score = 121 bits (303), Expect = 8e-27
Identities = 59/69 (85%), Positives = 63/69 (90%)
Frame = -3
Query: 589 VAGDGRGKTPLEYTGMVDAFRKTVRYEGFGALYKGLVPNSVKVVPSIALAFVTYEMVKDI 410
V G+GR LEYTGMVDAFRKTVR+EGFGALYKGLVPNSVKVVPSIA+AFVTYEMVKD+
Sbjct: 284 VTGEGRSTASLEYTGMVDAFRKTVRHEGFGALYKGLVPNSVKVVPSIAIAFVTYEMVKDV 343
Query: 409 LGVEIRISD 383
LGVE RISD
Sbjct: 344 LGVEFRISD 352
Score = 45.8 bits (107), Expect = 4e-04
Identities = 22/53 (41%), Positives = 32/53 (59%)
Frame = -3
Query: 565 TPLEYTGMVDAFRKTVRYEGFGALYKGLVPNSVKVVPSIALAFVTYEMVKDIL 407
+P +Y G+ A +R EG ALY+G +P+ + VVP + L F YE +KD L
Sbjct: 176 SPYQYRGIAHALATVLREEGPRALYRGWLPSVIGVVPYVGLNFSVYESLKDWL 228
Score = 36.6 bits (83), Expect = 0.24
Identities = 16/49 (32%), Positives = 27/49 (54%)
Frame = -3
Query: 559 LEYTGMVDAFRKTVRYEGFGALYKGLVPNSVKVVPSIALAFVTYEMVKD 413
++Y+G V + R EG L+KG N ++VP+ A+ F +YE +
Sbjct: 74 IKYSGTVQGLKHIWRTEGLRGLFKGNGTNCARIVPNSAVKFFSYEQASN 122
>ref|NP_595952.1| putative mitochondrial carrier protein [Schizosaccharomyces pombe]
gi|6983572|emb|CAA22679.2| putative mitochondrial
carrier protein [Schizosaccharomyces pombe]
Length = 426
Score = 63.5 bits (153), Expect = 2e-09
Identities = 29/60 (48%), Positives = 38/60 (63%)
Frame = -3
Query: 577 GRGKTPLEYTGMVDAFRKTVRYEGFGALYKGLVPNSVKVVPSIALAFVTYEMVKDILGVE 398
G P Y G +D F KT + EGF LYKGL PN +KV PS+A++++ YE K LG+E
Sbjct: 367 GTSAHPATYDGFIDCFYKTTKNEGFRGLYKGLSPNLLKVAPSVAISYLVYENCKKWLGLE 426
>pir||T39385 probable mitochondrial carrier protein - fission yeast
(Schizosaccharomyces pombe)
Length = 500
Score = 62.4 bits (150), Expect = 4e-09
Identities = 28/60 (46%), Positives = 38/60 (62%)
Frame = -3
Query: 577 GRGKTPLEYTGMVDAFRKTVRYEGFGALYKGLVPNSVKVVPSIALAFVTYEMVKDILGVE 398
G P Y G +D F KT + EGF LYKGL PN +KV PS+A++++ YE K LG++
Sbjct: 367 GTSAHPATYDGFIDCFYKTTKNEGFRGLYKGLSPNLLKVAPSVAISYLVYENCKKWLGLD 426
>emb|CAC18152.2| related to peroxisomal Ca-dependent solute carrier protein
[Neurospora crassa] gi|28917254|gb|EAA26965.1|
hypothetical protein ( (AL451012) related to peroxisomal
Ca-dependent solute carrier protein [Neurospora crassa]
)
Length = 631
Score = 59.7 bits (143), Expect = 3e-08
Identities = 29/57 (50%), Positives = 36/57 (62%)
Frame = -3
Query: 577 GRGKTPLEYTGMVDAFRKTVRYEGFGALYKGLVPNSVKVVPSIALAFVTYEMVKDIL 407
G P YTG VD KTVR EG LYKGL PN +KV P++++ +V YE +K IL
Sbjct: 572 GTAMHPPTYTGFVDVATKTVRNEGIRGLYKGLTPNLLKVAPALSITWVCYENMKTIL 628
>dbj|BAB55368.1| unnamed protein product [Homo sapiens]
Length = 315
Score = 53.5 bits (127), Expect = 2e-06
Identities = 22/49 (44%), Positives = 31/49 (62%)
Frame = -3
Query: 553 YTGMVDAFRKTVRYEGFGALYKGLVPNSVKVVPSIALAFVTYEMVKDIL 407
Y+G++D KT R EG G YKG+ PN ++V P+ + FV YE V +L
Sbjct: 259 YSGVIDVITKTWRKEGVGGFYKGIAPNLIRVTPACCITFVVYENVSHLL 307
Score = 38.1 bits (87), Expect = 0.084
Identities = 20/47 (42%), Positives = 25/47 (52%)
Frame = -3
Query: 556 EYTGMVDAFRKTVRYEGFGALYKGLVPNSVKVVPSIALAFVTYEMVK 416
+Y GM D K +YEG LYKG VP AL F+ YE++K
Sbjct: 162 QYKGMFDTLVKIYKYEGVRGLYKGFVPGLFGTSHG-ALQFMAYELLK 207
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 519,243,203
Number of Sequences: 1393205
Number of extensions: 11629456
Number of successful extensions: 27710
Number of sequences better than 10.0: 696
Number of HSP's better than 10.0 without gapping: 25971
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27682
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22569056698
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
