Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002029A_C01 KMC002029A_c01
(744 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P52902|ODPA_PEA Pyruvate dehydrogenase E1 component alpha sub... 136 4e-31
dbj|BAC57468.1| pyruvate dehydrogenase E1alpha subunit [Beta vul... 121 1e-26
dbj|BAC57469.1| pyruvate dehydrogenase E1 alpha subunit [Beta vu... 121 1e-26
gb|AAK26016.1|AF360306_1 putative pyruvate dehydrogenase e1 alph... 119 6e-26
pir||JC4358 pyruvate dehydrogenase (lipoamide) (EC 1.2.4.1) alph... 117 2e-25
>sp|P52902|ODPA_PEA Pyruvate dehydrogenase E1 component alpha subunit, mitochondrial
precursor (PDHE1-A) gi|7431564|pir||T06531 pyruvate
dehydrogenase (lipoamide) (EC 1.2.4.1) complex E1 alpha
chain - garden pea gi|1263302|gb|AAA97411.1| pyruvate
dehydrogenase E1 alpha subunit
Length = 397
Score = 136 bits (342), Expect = 4e-31
Identities = 65/75 (86%), Positives = 72/75 (95%)
Frame = -3
Query: 742 PLERVRKLLVSHEVATEKELKDMEKEVRKEVDEAIAKAKESSMPDPSDLYKNIYVKGYGV 563
P+ERVRKLL+SH++ATEKELKD EKEVRKEVDEAIAKAK+S MPDPSDL+ N+YVKGYGV
Sbjct: 323 PIERVRKLLLSHDIATEKELKDTEKEVRKEVDEAIAKAKDSPMPDPSDLFSNVYVKGYGV 382
Query: 562 EAFGVDRKEVRVTLP 518
EAFGVDRKEVRVTLP
Sbjct: 383 EAFGVDRKEVRVTLP 397
>dbj|BAC57468.1| pyruvate dehydrogenase E1alpha subunit [Beta vulgaris]
Length = 395
Score = 121 bits (303), Expect = 1e-26
Identities = 57/75 (76%), Positives = 68/75 (90%)
Frame = -3
Query: 742 PLERVRKLLVSHEVATEKELKDMEKEVRKEVDEAIAKAKESSMPDPSDLYKNIYVKGYGV 563
P+ERVRKLL++H++A EKELKD+EKE+RKEVDEAIAKAKES MPD S+L+ NIYVKGYGV
Sbjct: 321 PIERVRKLLLAHDIAGEKELKDIEKEIRKEVDEAIAKAKESPMPDTSELFTNIYVKGYGV 380
Query: 562 EAFGVDRKEVRVTLP 518
E+FG DRK +R TLP
Sbjct: 381 ESFGADRKVLRTTLP 395
>dbj|BAC57469.1| pyruvate dehydrogenase E1 alpha subunit [Beta vulgaris]
Length = 395
Score = 121 bits (303), Expect = 1e-26
Identities = 57/75 (76%), Positives = 68/75 (90%)
Frame = -3
Query: 742 PLERVRKLLVSHEVATEKELKDMEKEVRKEVDEAIAKAKESSMPDPSDLYKNIYVKGYGV 563
P+ERVRKLL++H++A EKELKD+EKE+RKEVDEAIAKAKES MPD S+L+ NIYVKGYGV
Sbjct: 321 PIERVRKLLLAHDIAGEKELKDIEKEIRKEVDEAIAKAKESPMPDTSELFTNIYVKGYGV 380
Query: 562 EAFGVDRKEVRVTLP 518
E+FG DRK +R TLP
Sbjct: 381 ESFGADRKVLRTTLP 395
>gb|AAK26016.1|AF360306_1 putative pyruvate dehydrogenase e1 alpha subunit [Arabidopsis
thaliana]
Length = 389
Score = 119 bits (297), Expect = 6e-26
Identities = 52/75 (69%), Positives = 69/75 (91%)
Frame = -3
Query: 742 PLERVRKLLVSHEVATEKELKDMEKEVRKEVDEAIAKAKESSMPDPSDLYKNIYVKGYGV 563
P+ER++KL++SH++ATEKELKDMEKE+RKEVD+AIAKAK+ MP+PSDL+ N+YVKG+G
Sbjct: 315 PIERIKKLVLSHDLATEKELKDMEKEIRKEVDDAIAKAKDCPMPEPSDLFTNVYVKGFGT 374
Query: 562 EAFGVDRKEVRVTLP 518
E+FG DRKEV+ +LP
Sbjct: 375 ESFGPDRKEVKASLP 389
>pir||JC4358 pyruvate dehydrogenase (lipoamide) (EC 1.2.4.1) alpha chain
precursor - Arabidopsis thaliana
gi|710400|gb|AAA86507.1| pyruvate dehydrogenase E1 alpha
subunit
Length = 389
Score = 117 bits (293), Expect = 2e-25
Identities = 51/75 (68%), Positives = 69/75 (92%)
Frame = -3
Query: 742 PLERVRKLLVSHEVATEKELKDMEKEVRKEVDEAIAKAKESSMPDPSDLYKNIYVKGYGV 563
P+ER++KL++SH++ATEKELKDMEKE+RKEVD+AIAKAK+ MP+PS+L+ N+YVKG+G
Sbjct: 315 PIERIKKLVLSHDLATEKELKDMEKEIRKEVDDAIAKAKDCPMPEPSELFTNVYVKGFGT 374
Query: 562 EAFGVDRKEVRVTLP 518
E+FG DRKEV+ +LP
Sbjct: 375 ESFGPDRKEVKASLP 389
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 604,079,210
Number of Sequences: 1393205
Number of extensions: 12520759
Number of successful extensions: 31233
Number of sequences better than 10.0: 120
Number of HSP's better than 10.0 without gapping: 29808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31163
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 35751090169
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
