Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002028A_C01 KMC002028A_c01
(1278 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||S53082 pollen allergen homolog, hypothetical (clone PPA1) -... 478 e-134
gb|AAK48848.1|AF350939_1 expansin [Prunus cerasus] 456 e-127
ref|NP_181500.1| expansin, putative; protein id: At2g39700.1, su... 456 e-127
gb|AAM47000.1|AF512542_1 alpha-expansin precursor [Gossypium hir... 456 e-127
pir||T50660 alpha-expansin 2 [imported] - Triphysaria versicolor... 456 e-127
>pir||S53082 pollen allergen homolog, hypothetical (clone PPA1) - garden pea
gi|732905|emb|CAA59470.1| homology with pollen allergens
[Pisum sativum]
Length = 258
Score = 478 bits (1230), Expect = e-134
Identities = 218/243 (89%), Positives = 229/243 (93%)
Frame = -3
Query: 1189 FVTTSARIPGVYTGGAWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALF 1010
F T+ARIPGVYTGG W SAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALF
Sbjct: 16 FAPTTARIPGVYTGGPWTSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALF 75
Query: 1009 NNGLSCGACFEIKCDQDPRWCNPGSPSIIVTATNFCPPNLAQPSDDGGWCNPPRTHFDLA 830
NNGLSCGACFE+KCDQDPRWCNPG+PSI++TATNFCPPN A+PSD+GGWCNPPR HFDLA
Sbjct: 76 NNGLSCGACFELKCDQDPRWCNPGNPSILITATNFCPPNFAEPSDNGGWCNPPRPHFDLA 135
Query: 829 MPMFFKIAQYRAGIVPVTYRRVPCRKKGGIRFTINGFRYFNLVLISNVAGAGDIVRVSVK 650
MPMF KIAQYRAGIVPV YRRVPCRK GGIRFTINGFRYFNLVLI+NVAGAGDIVRVSVK
Sbjct: 136 MPMFLKIAQYRAGIVPVAYRRVPCRKAGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVK 195
Query: 649 GTNSGWNSMSRNWGQNWQSNSDLVGQALSFRVTGSDRRTSTSWNVAPSHWQFGQTFTGKN 470
GTN+ W +MSRNWGQNWQSN+ VGQALSFRVTGSDRRTSTSWNVAP HWQFGQTFTGKN
Sbjct: 196 GTNTAWMTMSRNWGQNWQSNAVFVGQALSFRVTGSDRRTSTSWNVAPPHWQFGQTFTGKN 255
Query: 469 FRV 461
FRV
Sbjct: 256 FRV 258
>gb|AAK48848.1|AF350939_1 expansin [Prunus cerasus]
Length = 260
Score = 456 bits (1174), Expect = e-127
Identities = 207/238 (86%), Positives = 224/238 (93%)
Frame = -3
Query: 1174 ARIPGVYTGGAWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLS 995
ARIPGVYTG AW++AHATFYGGSDASGTMGGACGYGNLYSQGYGV+TAALSTALFNNGLS
Sbjct: 23 ARIPGVYTGDAWEAAHATFYGGSDASGTMGGACGYGNLYSQGYGVSTAALSTALFNNGLS 82
Query: 994 CGACFEIKCDQDPRWCNPGSPSIIVTATNFCPPNLAQPSDDGGWCNPPRTHFDLAMPMFF 815
CGACFEIKC DP WC+ GSPSI +TATNFCPPN AQPSD+GGWCNPPR HFDLAMPMF
Sbjct: 83 CGACFEIKCANDPNWCHSGSPSIFITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFL 142
Query: 814 KIAQYRAGIVPVTYRRVPCRKKGGIRFTINGFRYFNLVLISNVAGAGDIVRVSVKGTNSG 635
KIA+YRAGIVPV+YRRVPCRK+GGIRFTINGFRYFNLVL+SNVAGAGDIVRVSVKG+ +G
Sbjct: 143 KIAEYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVSNVAGAGDIVRVSVKGSKTG 202
Query: 634 WNSMSRNWGQNWQSNSDLVGQALSFRVTGSDRRTSTSWNVAPSHWQFGQTFTGKNFRV 461
W SMSRNWGQNWQSN+ LVGQ+LSFRV GSDRRTSTSWN+ P++WQFGQTFTGKNFRV
Sbjct: 203 WMSMSRNWGQNWQSNAVLVGQSLSFRVRGSDRRTSTSWNIVPANWQFGQTFTGKNFRV 260
>ref|NP_181500.1| expansin, putative; protein id: At2g39700.1, supported by cDNA:
17353., supported by cDNA: gi_15294171, supported by
cDNA: gi_17065213, supported by cDNA: gi_20259979
[Arabidopsis thaliana] gi|20138158|sp|O48818|EXP4_ARATH
Alpha-expansin 4 precursor (At-EXP4) (AtEx4)
(Ath-ExpAlpha-1.6) gi|25344429|pir||D84820 probable
expansin [imported] - Arabidopsis thaliana
gi|2795809|gb|AAB97125.1| putative expansin [Arabidopsis
thaliana] gi|15294172|gb|AAK95263.1|AF410277_1
At2g39700/F17A14.7 [Arabidopsis thaliana]
gi|17065214|gb|AAL32761.1| putative expansin [Arabidopsis
thaliana] gi|20259980|gb|AAM13337.1| putative expansin
[Arabidopsis thaliana]
Length = 257
Score = 456 bits (1174), Expect = e-127
Identities = 206/243 (84%), Positives = 226/243 (92%)
Frame = -3
Query: 1189 FVTTSARIPGVYTGGAWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALF 1010
F ARIPG+Y+GGAWQ+AHATFYGGSDASGTMGGACGYGNLYSQGYG NTAALSTALF
Sbjct: 15 FSLADARIPGIYSGGAWQNAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALF 74
Query: 1009 NNGLSCGACFEIKCDQDPRWCNPGSPSIIVTATNFCPPNLAQPSDDGGWCNPPRTHFDLA 830
NNG+SCGACFE+KC DP+WC+ GSPSI++TATNFCPPNLAQPSD+GGWCNPPR HFDLA
Sbjct: 75 NNGMSCGACFELKCANDPQWCHSGSPSILITATNFCPPNLAQPSDNGGWCNPPREHFDLA 134
Query: 829 MPMFFKIAQYRAGIVPVTYRRVPCRKKGGIRFTINGFRYFNLVLISNVAGAGDIVRVSVK 650
MP+F KIAQYRAGIVPV+YRRVPCRK+GGIRFTING RYFNLVLI+NVAGAGDIVR SVK
Sbjct: 135 MPVFLKIAQYRAGIVPVSYRRVPCRKRGGIRFTINGHRYFNLVLITNVAGAGDIVRASVK 194
Query: 649 GTNSGWNSMSRNWGQNWQSNSDLVGQALSFRVTGSDRRTSTSWNVAPSHWQFGQTFTGKN 470
G+ +GW S+SRNWGQNWQSN+ LVGQALSFRVTGSDRRTSTSWN+ PS+WQFGQTF GKN
Sbjct: 195 GSRTGWMSLSRNWGQNWQSNAVLVGQALSFRVTGSDRRTSTSWNMVPSNWQFGQTFVGKN 254
Query: 469 FRV 461
FRV
Sbjct: 255 FRV 257
>gb|AAM47000.1|AF512542_1 alpha-expansin precursor [Gossypium hirsutum]
Length = 264
Score = 456 bits (1173), Expect = e-127
Identities = 210/243 (86%), Positives = 227/243 (92%)
Frame = -3
Query: 1189 FVTTSARIPGVYTGGAWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALF 1010
F +ARIPGV+TGGAW+SAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALS ALF
Sbjct: 22 FGWVNARIPGVFTGGAWESAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSPALF 81
Query: 1009 NNGLSCGACFEIKCDQDPRWCNPGSPSIIVTATNFCPPNLAQPSDDGGWCNPPRTHFDLA 830
NNGLSCGACFEIKC DPRWC+ GSPSII+TATNFCPPN A P+D+GGWCNPPR HFDLA
Sbjct: 82 NNGLSCGACFEIKCANDPRWCHSGSPSIIITATNFCPPNYALPNDNGGWCNPPRPHFDLA 141
Query: 829 MPMFFKIAQYRAGIVPVTYRRVPCRKKGGIRFTINGFRYFNLVLISNVAGAGDIVRVSVK 650
MPMF KIA+YRAGIVPV+YRRVPCRK+GGIRFTINGFRYFNLVL++NVAGAGDIV+V VK
Sbjct: 142 MPMFLKIAEYRAGIVPVSYRRVPCRKQGGIRFTINGFRYFNLVLVTNVAGAGDIVKVKVK 201
Query: 649 GTNSGWNSMSRNWGQNWQSNSDLVGQALSFRVTGSDRRTSTSWNVAPSHWQFGQTFTGKN 470
GTN+ W SMSRNWGQNWQSN+ LVGQALSFRVTGSDRRTSTS NVAP++WQFGQTFTGKN
Sbjct: 202 GTNTNWMSMSRNWGQNWQSNAVLVGQALSFRVTGSDRRTSTSLNVAPANWQFGQTFTGKN 261
Query: 469 FRV 461
FRV
Sbjct: 262 FRV 264
>pir||T50660 alpha-expansin 2 [imported] - Triphysaria versicolor
gi|6942324|gb|AAF32410.1|AF230277_1 alpha-expansin 2
[Triphysaria versicolor]
Length = 262
Score = 456 bits (1172), Expect = e-127
Identities = 211/246 (85%), Positives = 229/246 (92%), Gaps = 3/246 (1%)
Frame = -3
Query: 1189 FVTTS-ARIPGVYTGGAWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTAL 1013
F+T++ ARIPG+Y+GG WQ AHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTAL
Sbjct: 17 FLTSAQARIPGIYSGGPWQGAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTAL 76
Query: 1012 FNNGLSCGACFEIKCD--QDPRWCNPGSPSIIVTATNFCPPNLAQPSDDGGWCNPPRTHF 839
FNNGLSCGACFEI+CD QD +WCNPG+PSI+VTATNFCPPN AQPSD+GGWCNPPRTHF
Sbjct: 77 FNNGLSCGACFEIRCDMAQDGKWCNPGTPSILVTATNFCPPNFAQPSDNGGWCNPPRTHF 136
Query: 838 DLAMPMFFKIAQYRAGIVPVTYRRVPCRKKGGIRFTINGFRYFNLVLISNVAGAGDIVRV 659
DLAMPMF KIAQYRAGIVPV YRR+PCRK+GGIRFTINGFRYFNLVL++NVAGAGDIVRV
Sbjct: 137 DLAMPMFLKIAQYRAGIVPVNYRRIPCRKQGGIRFTINGFRYFNLVLVTNVAGAGDIVRV 196
Query: 658 SVKGTNSGWNSMSRNWGQNWQSNSDLVGQALSFRVTGSDRRTSTSWNVAPSHWQFGQTFT 479
S+KGTN+ W SMSRNWGQNWQSN LVGQALSFRVT SD R+S S NVAP+HWQFGQTFT
Sbjct: 197 SIKGTNTQWVSMSRNWGQNWQSNIVLVGQALSFRVTASDHRSSASMNVAPAHWQFGQTFT 256
Query: 478 GKNFRV 461
GKNFRV
Sbjct: 257 GKNFRV 262
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,245,149,311
Number of Sequences: 1393205
Number of extensions: 31604607
Number of successful extensions: 139672
Number of sequences better than 10.0: 431
Number of HSP's better than 10.0 without gapping: 99006
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134779
length of database: 448,689,247
effective HSP length: 126
effective length of database: 273,145,417
effective search space used: 81670479683
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
