Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002026A_C03 KMC002026A_c03
(1273 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_632678.1| mannosyltransferase [Methanosarcina mazei Goe1]... 33 7.4
ref|NP_702058.1| hypothetical protein [Plasmodium falciparum 3D7... 33 9.7
ref|NP_500068.1| Putative protein family member, nematode specif... 33 9.7
>ref|NP_632678.1| mannosyltransferase [Methanosarcina mazei Goe1]
gi|20905048|gb|AAM30350.1| mannosyltransferase
[Methanosarcina mazei Goe1]
Length = 370
Score = 33.5 bits (75), Expect = 7.4
Identities = 18/53 (33%), Positives = 28/53 (51%)
Frame = +3
Query: 363 KFFHLSHGSTYVIF*SKKYLFKALYPTLRSGFTGGSPPIDTMKLACPAIQAQS 521
K H++ ++ KK F +YP+L GF G PP++ M L CP I + +
Sbjct: 254 KVIHVNGSDDFLAALYKK-AFCLIYPSLYEGF--GIPPLEAMSLGCPVIASNT 303
>ref|NP_702058.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23497235|gb|AAN36782.1|AE014818_47 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 4466
Score = 33.1 bits (74), Expect = 9.7
Identities = 22/59 (37%), Positives = 32/59 (53%), Gaps = 6/59 (10%)
Frame = +1
Query: 724 TITN*LTSSPELNH------S*KNSSSMYMNGYHIGLNNICLQNPNYTVTKNNNMIDMY 882
TI+N L++ P +NH S N++++ N +I NN N N T NN+M DMY
Sbjct: 1847 TISNYLSNDPNINHMYTKSGSVNNNNNINNNNNNINNNNNINNNNNNTFILNNSM-DMY 1904
>ref|NP_500068.1| Putative protein family member, nematode specific [Caenorhabditis
elegans] gi|25395998|pir||E88638 protein F58F6.5
[imported] - Caenorhabditis elegans
gi|2662602|gb|AAB88361.1| Hypothetical protein F58F6.5
[Caenorhabditis elegans]
Length = 246
Score = 33.1 bits (74), Expect = 9.7
Identities = 16/63 (25%), Positives = 31/63 (48%)
Frame = -1
Query: 844 NLDFVNKCYSTLYDNHSCTLMSCFFNYDLILGKMSINLLLFITV*FGFCKHVILINNLVV 665
N+ F N C+ +++ + SC + I + + +F + FC + IL +NLV+
Sbjct: 55 NISFYNFCFESIHKHSSCPIF--------IFKRSNAITAIFFSYLIDFCHYSILFSNLVI 106
Query: 664 IVQ 656
+Q
Sbjct: 107 SIQ 109
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 976,029,761
Number of Sequences: 1393205
Number of extensions: 20636824
Number of successful extensions: 60954
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 52588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60884
length of database: 448,689,247
effective HSP length: 126
effective length of database: 273,145,417
effective search space used: 81124188849
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
