Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002024A_C01 KMC002024A_c01
(633 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB03379.1| unnamed protein product [Oryza sativa (japonica ... 63 3e-09
pir||A86366 T26J12.6 protein - Arabidopsis thaliana gi|2829894|g... 62 6e-09
ref|NP_173730.1| unknown protein; protein id: At1g23170.1 [Arabi... 62 6e-09
ref|NP_177234.1| unknown protein; protein id: At1g70770.1 [Arabi... 49 7e-05
gb|AAF23204.1|AC016795_17 unknown protein [Arabidopsis thaliana] 40 0.033
>dbj|BAB03379.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 586
Score = 63.2 bits (152), Expect = 3e-09
Identities = 42/88 (47%), Positives = 51/88 (57%), Gaps = 2/88 (2%)
Frame = -1
Query: 624 EPLREILKNLRPKNEKALATETDPARQALFKDADKYCKILSGRVSQGHGC-RTCLTFTVL 448
E L+ LKNLR KNE AL TD +QA K ADKY K + GR+S+G C + L L
Sbjct: 496 ESLKVTLKNLRTKNEAALEAATDSGKQASIKAADKYSKEILGRLSRGGACLKGSLLVITL 555
Query: 447 VVAVGAVLLSPNME-SLDFKKLSVVFNS 367
VA G V LSPN+E D+ KL + S
Sbjct: 556 AVAAGFV-LSPNLEIPSDWDKLQAMVAS 582
>pir||A86366 T26J12.6 protein - Arabidopsis thaliana gi|2829894|gb|AAC00602.1|
Unknown protein [Arabidopsis thaliana]
Length = 1299
Score = 62.0 bits (149), Expect = 6e-09
Identities = 33/81 (40%), Positives = 51/81 (62%), Gaps = 4/81 (4%)
Frame = -1
Query: 618 LREILKNLRPKNEKALATETDPARQALFKDADKYCKILSGRVSQGHGCRTCLTFTVLVVA 439
L + +K+LR KNE+AL + Q+L+KDADKYCK+++G++S G GC + T ++A
Sbjct: 399 LNQTMKSLRQKNEEALTEGGNGVSQSLYKDADKYCKVIAGKLSSG-GCIKSIATTAALLA 457
Query: 438 ----VGAVLLSPNMESLDFKK 388
GA LS N E++ + K
Sbjct: 458 ATGFAGAAALSANPEAIAYLK 478
>ref|NP_173730.1| unknown protein; protein id: At1g23170.1 [Arabidopsis thaliana]
Length = 569
Score = 62.0 bits (149), Expect = 6e-09
Identities = 33/81 (40%), Positives = 51/81 (62%), Gaps = 4/81 (4%)
Frame = -1
Query: 618 LREILKNLRPKNEKALATETDPARQALFKDADKYCKILSGRVSQGHGCRTCLTFTVLVVA 439
L + +K+LR KNE+AL + Q+L+KDADKYCK+++G++S G GC + T ++A
Sbjct: 469 LNQTMKSLRQKNEEALTEGGNGVSQSLYKDADKYCKVIAGKLSSG-GCIKSIATTAALLA 527
Query: 438 ----VGAVLLSPNMESLDFKK 388
GA LS N E++ + K
Sbjct: 528 ATGFAGAAALSANPEAIAYLK 548
>ref|NP_177234.1| unknown protein; protein id: At1g70770.1 [Arabidopsis thaliana]
gi|25406072|pir||C96732 hypothetical protein F15H11.2
[imported] - Arabidopsis thaliana
gi|5902390|gb|AAD55492.1|AC008148_2 Unknown protein
[Arabidopsis thaliana]
gi|12324751|gb|AAG52333.1|AC011663_12 unknown protein;
13405-15968 [Arabidopsis thaliana]
gi|22531184|gb|AAM97096.1| unknown protein [Arabidopsis
thaliana]
Length = 610
Score = 48.5 bits (114), Expect = 7e-05
Identities = 29/75 (38%), Positives = 40/75 (52%), Gaps = 4/75 (5%)
Frame = -1
Query: 618 LREILKNLRPKNEKALATETDPARQALFKDADKYCKILSGRVSQGHGC----RTCLTFTV 451
L +K+ R KNE+ + A +L+K+ADK CK +SGR+S+G GC L F
Sbjct: 507 LNRTMKSFRLKNEEVITE--GGANASLYKEADKSCKTISGRLSRGSGCLKGTAITLVFLA 564
Query: 450 LVVAVGAVLLSPNME 406
A A +LS N E
Sbjct: 565 AAGAAAAAVLSSNPE 579
>gb|AAF23204.1|AC016795_17 unknown protein [Arabidopsis thaliana]
Length = 459
Score = 39.7 bits (91), Expect = 0.033
Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Frame = -1
Query: 618 LREILKNLRPKNEKALATETDPARQALFKDADKYCKILSGRVSQGHGC-RTCLTFTVLVV 442
L + ++++R KNEKA+ + +K+ADK CK++SGR + C + T +V+
Sbjct: 392 LNQTMESIRLKNEKAITEGGTIGSR--YKEADKSCKVMSGRFFPENACLKGTAIITAVVL 449
Query: 441 AVGAVLLS 418
A AVL S
Sbjct: 450 AAVAVLAS 457
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 522,912,473
Number of Sequences: 1393205
Number of extensions: 10687361
Number of successful extensions: 24572
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 23865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24564
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26154777244
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
