Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002021A_C01 KMC002021A_c01
(377 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO52140.1| similar to Plasmodium falciparum (isolate 3D7). H... 31 3.4
sp|P23098|DYHC_TRIGR Dynein beta chain, ciliary gi|85393|pir||S1... 30 5.7
gb|EAA21018.1| Arabidopsis thaliana MXI22.1-related [Plasmodium ... 30 5.7
ref|XP_235749.1| similar to hypothetical protein FLJ11011 [Homo ... 30 9.8
>gb|AAO52140.1| similar to Plasmodium falciparum (isolate 3D7). Hypothetical protein
[Dictyostelium discoideum]
Length = 1107
Score = 31.2 bits (69), Expect = 3.4
Identities = 22/67 (32%), Positives = 34/67 (49%), Gaps = 8/67 (11%)
Frame = +3
Query: 87 ISWLTSIDHWNK*KKKQLKQQSLASIARKQQKQGN*QYSVLHNP------TFPSSSLQ-- 242
I++ T+IDH + +KKQ + Q L +QQ+Q Q N T SS +Q
Sbjct: 935 INYFTNIDHLKEQQKKQAQLQQLQQQQAQQQQQAQQQTQQQQNSNINIINTIESSQIQQN 994
Query: 243 NSARLYL 263
N+ ++YL
Sbjct: 995 NNIQIYL 1001
>sp|P23098|DYHC_TRIGR Dynein beta chain, ciliary gi|85393|pir||S17653 dynein beta heavy
chain, ciliary - sea urchin (Tripneustes gratilla)
gi|10710|emb|CAA42170.1| Beta heavy chain of outer-arm
axonemal dynein ATPase [Tripneustes gratilla]
gi|227997|prf||1714372A dynein:SUBUNIT=beta heavy chain
Length = 4466
Score = 30.4 bits (67), Expect = 5.7
Identities = 19/70 (27%), Positives = 36/70 (51%)
Frame = +3
Query: 99 TSIDHWNK*KKKQLKQQSLASIARKQQKQGN*QYSVLHNPTFPSSSLQNSARLYLHTSPS 278
TSID +++ ++ L S+ + + +G+ + S+ + S+ S++LYL
Sbjct: 2956 TSIDWFHEWPQEALVSVSMRFLDEVELLKGDIKKSIAEFMAYVHVSVNESSKLYLTNERR 3015
Query: 279 HIYHYPKSFL 308
+ Y PKSFL
Sbjct: 3016 YNYTTPKSFL 3025
>gb|EAA21018.1| Arabidopsis thaliana MXI22.1-related [Plasmodium yoelii yoelii]
Length = 901
Score = 30.4 bits (67), Expect = 5.7
Identities = 21/57 (36%), Positives = 27/57 (46%), Gaps = 1/57 (1%)
Frame = +1
Query: 31 IINSWYWTLLTNLYI-LIYKFLGSHQ*TTGTSKKKNN*SSNPLHL*LGNNKSKGTSN 198
IINS W LTN+Y ++K L T +SK N N + + N K K SN
Sbjct: 227 IINSNKWINLTNIYTNSLFKKLAESSTKTTSSKDSQNNDINNVSSTVTNEKKKNRSN 283
>ref|XP_235749.1| similar to hypothetical protein FLJ11011 [Homo sapiens] [Rattus
norvegicus]
Length = 191
Score = 29.6 bits (65), Expect = 9.8
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = -1
Query: 227 RKCWIMENTILLVPLLLLFPSYRCKGLLL*LFFFLLVPVV 108
RKCW + L + FP + L L +FFFL P +
Sbjct: 3 RKCWAQARILRWTALQVPFPDWGALKLALLIFFFLRCPTL 42
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 313,715,613
Number of Sequences: 1393205
Number of extensions: 6186429
Number of successful extensions: 16557
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 16250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16549
length of database: 448,689,247
effective HSP length: 101
effective length of database: 307,975,542
effective search space used: 7391413008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
