Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002018A_C01 KMC002018A_c01
(619 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_348647.1| Hypothetical protein, CF-4 family [Clostridium ... 34 1.7
pir||S28079 DNA-directed DNA polymerase (EC 2.7.7.7) alpha - fru... 32 6.6
sp|P26019|DPOA_DROME DNA polymerase alpha catalytic subunit gi|2... 32 6.6
ref|NP_536736.2| DNA polymerase alpha 180kD CG6349-PA gi|2317190... 32 6.6
gb|AAB24152.1| DNA polymerase-primase 180 kda subunit [Drosophil... 32 6.6
>ref|NP_348647.1| Hypothetical protein, CF-4 family [Clostridium acetobutylicum]
gi|25378666|pir||H97149 hypothetical protein CAC2028
[imported] - Clostridium acetobutylicum
gi|15025012|gb|AAK79987.1|AE007706_9 Hypothetical
protein, CF-4 family [Clostridium acetobutylicum]
Length = 210
Score = 33.9 bits (76), Expect = 1.7
Identities = 19/63 (30%), Positives = 30/63 (47%)
Frame = -2
Query: 207 FLEVFGRFLLKWLSFYCWLGYYTHVERSYL*IIIYISFVFEKKCIEIVKN*FIYFTFNHE 28
F+ + + +++ L WL YYT R +Y F+ +K C ++K I TF E
Sbjct: 150 FIGNYNKVIIQTLKLENWLAYYTMYRR------VYALFLLDKHCELLIKAGEIDKTFTDE 203
Query: 27 SYS 19
YS
Sbjct: 204 EYS 206
>pir||S28079 DNA-directed DNA polymerase (EC 2.7.7.7) alpha - fruit fly
(Drosophila melanogaster)
Length = 1505
Score = 32.0 bits (71), Expect = 6.6
Identities = 29/119 (24%), Positives = 49/119 (40%)
Frame = +1
Query: 94 ERYINNNLQITPLHMGIVT*PTIKAQPLQQKSPKDL*KPFQGALTPNQNPYDCPTGKDRP 273
ER + + + + PTIK +P+ +K+P K + + N+ + C +
Sbjct: 220 ERILKPKAAVPNTKVAFFSSPTIKKEPMPEKTPAK--KATEDPFSDNEMDFSCLDDDENQ 277
Query: 274 F*SRKTVTRLNLSNRTTLDEQRPSRG*AEQNTHDPTTKTHRSAKELRRNPI*NINRKLN 450
F KT +S T E+ AE++ P +T S KE +I+R LN
Sbjct: 278 FDVEKTQQTEKVSQTKTAAEKTSQSKVAEKSA--PKKETTGSPKESESE---DISRLLN 331
>sp|P26019|DPOA_DROME DNA polymerase alpha catalytic subunit gi|217344|dbj|BAA14340.1|
DNA polymerase alpha [Drosophila melanogaster]
Length = 1505
Score = 32.0 bits (71), Expect = 6.6
Identities = 29/119 (24%), Positives = 49/119 (40%)
Frame = +1
Query: 94 ERYINNNLQITPLHMGIVT*PTIKAQPLQQKSPKDL*KPFQGALTPNQNPYDCPTGKDRP 273
ER + + + + PTIK +P+ +K+P K + + N+ + C +
Sbjct: 220 ERILKPKAAVPNTKVAFFSSPTIKKEPMPEKTPAK--KATEDPFSDNEMDFSCLDDDENQ 277
Query: 274 F*SRKTVTRLNLSNRTTLDEQRPSRG*AEQNTHDPTTKTHRSAKELRRNPI*NINRKLN 450
F KT +S T E+ AE++ P +T S KE +I+R LN
Sbjct: 278 FDVEKTQQTEKVSQTKTAAEKTSQSKVAEKSA--PKKETTGSPKESESE---DISRLLN 331
>ref|NP_536736.2| DNA polymerase alpha 180kD CG6349-PA gi|23171902|gb|AAF55908.2|
CG6349-PA [Drosophila melanogaster]
Length = 1488
Score = 32.0 bits (71), Expect = 6.6
Identities = 29/119 (24%), Positives = 49/119 (40%)
Frame = +1
Query: 94 ERYINNNLQITPLHMGIVT*PTIKAQPLQQKSPKDL*KPFQGALTPNQNPYDCPTGKDRP 273
ER + + + + PTIK +P+ +K+P K + + N+ + C +
Sbjct: 220 ERILKPKAAVPNTKVAFFSSPTIKKEPMPEKTPAK--KATEDPFSDNEMDFSCLDDDENQ 277
Query: 274 F*SRKTVTRLNLSNRTTLDEQRPSRG*AEQNTHDPTTKTHRSAKELRRNPI*NINRKLN 450
F KT +S T E+ AE++ P +T S KE +I+R LN
Sbjct: 278 FDVEKTQQTEKVSQTKTAAEKTSQSKVAEKSA--PKKETTGSPKESESE---DISRLLN 331
>gb|AAB24152.1| DNA polymerase-primase 180 kda subunit [Drosophila melanogaster]
Length = 1490
Score = 32.0 bits (71), Expect = 6.6
Identities = 29/119 (24%), Positives = 49/119 (40%)
Frame = +1
Query: 94 ERYINNNLQITPLHMGIVT*PTIKAQPLQQKSPKDL*KPFQGALTPNQNPYDCPTGKDRP 273
ER + + + + PTIK +P+ +K+P K + + N+ + C +
Sbjct: 222 ERILKPKAAVPNTKVAFFSSPTIKKEPMPEKTPAK--KATEDPFSDNEMDFSCLDDDENQ 279
Query: 274 F*SRKTVTRLNLSNRTTLDEQRPSRG*AEQNTHDPTTKTHRSAKELRRNPI*NINRKLN 450
F KT +S T E+ AE++ P +T S KE +I+R LN
Sbjct: 280 FDVEKTQQTEKVSQTKTAAEKTSQSKVAEKSA--PKKETTGSPKESESE---DISRLLN 333
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 538,659,465
Number of Sequences: 1393205
Number of extensions: 12034636
Number of successful extensions: 40831
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 38584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40753
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 24733321959
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
