Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002017A_C01 KMC002017A_c01
(528 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_197366.1| putative protein; protein id: At5g18650.1, supp... 152 3e-36
gb|AAD02556.1| PGPD14 [Petunia x hybrida] 103 1e-21
gb|AAM65683.1| PGPD14 protein [Arabidopsis thaliana] 100 1e-20
ref|NP_197683.1| PGPD14 protein; protein id: At5g22920.1, suppor... 100 1e-20
ref|NP_197938.1| putative protein; protein id: At5g25560.1 [Arab... 100 2e-20
>ref|NP_197366.1| putative protein; protein id: At5g18650.1, supported by cDNA:
gi_17381207, supported by cDNA: gi_20465812 [Arabidopsis
thaliana] gi|17381208|gb|AAL36416.1| unknown protein
[Arabidopsis thaliana] gi|20465813|gb|AAM20011.1|
unknown protein [Arabidopsis thaliana]
Length = 267
Score = 152 bits (383), Expect = 3e-36
Identities = 64/84 (76%), Positives = 74/84 (87%)
Frame = -3
Query: 526 MIKRDHYCCPICSKSIADMSMIWKRTDEEIEATVMPEVYRYRKVWILCNDCNNTTEVYFH 347
MIKRD +CCPICS+S+ DMS W+R DEEIEAT MP YR +KVWILCNDCN+TTEV+FH
Sbjct: 184 MIKRDKFCCPICSRSVIDMSKTWQRLDEEIEATAMPSDYRDKKVWILCNDCNDTTEVHFH 243
Query: 346 ILGQKCGHCRSYNTRAISPPICPQ 275
I+GQKCGHCRSYNTRAI+PP+ PQ
Sbjct: 244 IIGQKCGHCRSYNTRAIAPPVLPQ 267
>gb|AAD02556.1| PGPD14 [Petunia x hybrida]
Length = 285
Score = 103 bits (258), Expect = 1e-21
Identities = 40/75 (53%), Positives = 58/75 (77%)
Frame = -3
Query: 526 MIKRDHYCCPICSKSIADMSMIWKRTDEEIEATVMPEVYRYRKVWILCNDCNNTTEVYFH 347
M + + Y CP+CS+S DMS +W++ D+E+ +T MPE+Y+ + VWILCNDC T+EV FH
Sbjct: 193 MEQHNQYSCPVCSRSYCDMSRVWEKLDQEVASTPMPEMYQNKMVWILCNDCGETSEVNFH 252
Query: 346 ILGQKCGHCRSYNTR 302
I+ +KC +C+SYNTR
Sbjct: 253 IVARKCPNCKSYNTR 267
>gb|AAM65683.1| PGPD14 protein [Arabidopsis thaliana]
Length = 274
Score = 100 bits (248), Expect = 1e-20
Identities = 40/71 (56%), Positives = 51/71 (71%)
Frame = -3
Query: 514 DHYCCPICSKSIADMSMIWKRTDEEIEATVMPEVYRYRKVWILCNDCNNTTEVYFHILGQ 335
+ Y CP+CSKSI DMS +WK+ DEE+ A MP++Y + VWILCNDC + T V FH++
Sbjct: 181 NRYTCPVCSKSICDMSNLWKKLDEEVAAYPMPKLYENKMVWILCNDCGSNTNVRFHLIAH 240
Query: 334 KCGHCRSYNTR 302
KC C SYNTR
Sbjct: 241 KCSSCGSYNTR 251
>ref|NP_197683.1| PGPD14 protein; protein id: At5g22920.1, supported by cDNA: 41666.,
supported by cDNA: gi_15450520 [Arabidopsis thaliana]
gi|10177239|dbj|BAB10613.1| PGPD14 protein [Arabidopsis
thaliana] gi|15450521|gb|AAK96553.1| AT5g22920/MRN17_15
[Arabidopsis thaliana] gi|27363264|gb|AAO11551.1|
At5g22920/MRN17_15 [Arabidopsis thaliana]
Length = 291
Score = 100 bits (248), Expect = 1e-20
Identities = 40/71 (56%), Positives = 51/71 (71%)
Frame = -3
Query: 514 DHYCCPICSKSIADMSMIWKRTDEEIEATVMPEVYRYRKVWILCNDCNNTTEVYFHILGQ 335
+ Y CP+CSKSI DMS +WK+ DEE+ A MP++Y + VWILCNDC + T V FH++
Sbjct: 198 NRYTCPVCSKSICDMSNLWKKLDEEVAAYPMPKMYENKMVWILCNDCGSNTNVRFHLIAH 257
Query: 334 KCGHCRSYNTR 302
KC C SYNTR
Sbjct: 258 KCSSCGSYNTR 268
>ref|NP_197938.1| putative protein; protein id: At5g25560.1 [Arabidopsis thaliana]
Length = 272
Score = 99.8 bits (247), Expect = 2e-20
Identities = 43/74 (58%), Positives = 54/74 (72%), Gaps = 2/74 (2%)
Frame = -3
Query: 517 RDHY--CCPICSKSIADMSMIWKRTDEEIEATVMPEVYRYRKVWILCNDCNNTTEVYFHI 344
RDHY CP+CSKS+ DMS +W++ D EI AT MPE Y+ R V ILCNDC EV +H+
Sbjct: 195 RDHYQYACPLCSKSVCDMSKVWEKFDMEIAATPMPEPYQNRMVQILCNDCGKKAEVQYHV 254
Query: 343 LGQKCGHCRSYNTR 302
+ QKC +C+SYNTR
Sbjct: 255 VAQKCPNCKSYNTR 268
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 448,619,679
Number of Sequences: 1393205
Number of extensions: 9279445
Number of successful extensions: 19769
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 19295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19761
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17308240320
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
