Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002013A_C01 KMC002013A_c01
(762 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB83948.1| CIG1 [Nicotiana tabacum] 209 3e-53
ref|NP_198687.1| proline oxidase, mitochondrial precursor -like ... 201 7e-51
sp|P92983|PROD_ARATH Proline oxidase, mitochondrial precursor (O... 195 5e-49
ref|NP_189701.2| hypothetical protein; protein id: At3g30775.1, ... 195 5e-49
dbj|BAA11682.1| proline oxidase precursor [Arabidopsis thaliana] 194 9e-49
>dbj|BAB83948.1| CIG1 [Nicotiana tabacum]
Length = 493
Score = 209 bits (533), Expect = 3e-53
Identities = 100/146 (68%), Positives = 124/146 (84%)
Frame = -3
Query: 760 MSSESKLAESLGYASPIHKTIKDTHNCFNGCSSFLLEKIANGPGSVVLATHNIESGKLAA 581
MSSE +LA LG SPIH +I+ TH+CFN C+ F+L++I+NG G+VVLATHNI+SGKLAA
Sbjct: 346 MSSERELASRLGVQSPIHDSIEQTHDCFNSCAEFMLDEISNGSGAVVLATHNIDSGKLAA 405
Query: 580 AKAYELGIGKVNHKMEFAQLYGMSDALSFGLSSAGFQVSKYMPFGPVEMVMPYLLRRAEE 401
+KA +LGI K + K++FAQLYGM++ LSFGL +AGFQVSKY+PFGPVE VMPYL+RRAEE
Sbjct: 406 SKAIDLGIRKDSQKLQFAQLYGMAEGLSFGLRNAGFQVSKYLPFGPVEQVMPYLIRRAEE 465
Query: 400 NRGILAASGFDRQLIRKELGRRLKAA 323
NRG+L+ S FDRQL+RKEL RR K A
Sbjct: 466 NRGLLSTSAFDRQLMRKELTRRFKVA 491
>ref|NP_198687.1| proline oxidase, mitochondrial precursor -like protein; protein id:
At5g38710.1 [Arabidopsis thaliana]
Length = 476
Score = 201 bits (512), Expect = 7e-51
Identities = 98/146 (67%), Positives = 120/146 (82%), Gaps = 1/146 (0%)
Frame = -3
Query: 760 MSSESKLAESLGYASPIHKTIKDTHNCFNGCSSFLLEKIANGPG-SVVLATHNIESGKLA 584
MSSE+KLA+SLGY SP+H TI++TH+C+N C SFL+EK +NG G +V+LATHN +SGKL
Sbjct: 330 MSSEAKLADSLGYKSPVHDTIQNTHDCYNDCMSFLMEKASNGSGIAVILATHNTDSGKLG 389
Query: 583 AAKAYELGIGKVNHKMEFAQLYGMSDALSFGLSSAGFQVSKYMPFGPVEMVMPYLLRRAE 404
A KA ELGI K N K+EFAQLYGMSDALSFGL AGF VSKYMP+GPV+ +PYL+RRA
Sbjct: 390 ARKASELGINKENGKIEFAQLYGMSDALSFGLKRAGFNVSKYMPYGPVDTAIPYLIRRAY 449
Query: 403 ENRGILAASGFDRQLIRKELGRRLKA 326
ENRG+++ DRQL+RKEL RR+ A
Sbjct: 450 ENRGMMSTGALDRQLMRKELKRRVMA 475
>sp|P92983|PROD_ARATH Proline oxidase, mitochondrial precursor (Osmotic stress-induced
proline dehydrogenase)
Length = 499
Score = 195 bits (496), Expect = 5e-49
Identities = 98/148 (66%), Positives = 117/148 (78%), Gaps = 1/148 (0%)
Frame = -3
Query: 760 MSSESKLAESLGYASPIHKTIKDTHNCFNGCSSFLLEKIANGPG-SVVLATHNIESGKLA 584
MSSE+ LA+SLG SP+H TI+DTH+C+N C +FL+EK +NG G VVLATHN +SG+LA
Sbjct: 351 MSSEASLADSLGCKSPVHDTIQDTHSCYNDCMTFLMEKASNGSGFGVVLATHNADSGRLA 410
Query: 583 AAKAYELGIGKVNHKMEFAQLYGMSDALSFGLSSAGFQVSKYMPFGPVEMVMPYLLRRAE 404
+ KA +LGI K N K+EFAQLYGMSDALSFGL AGF VSKYMPFGPV +PYLLRRA
Sbjct: 411 SRKASDLGIDKQNGKIEFAQLYGMSDALSFGLKRAGFNVSKYMPFGPVATAIPYLLRRAY 470
Query: 403 ENRGILAASGFDRQLIRKELGRRLKAAV 320
ENRG++A DRQL+R EL RRL A +
Sbjct: 471 ENRGMMATGAHDRQLMRMELKRRLIAGI 498
>ref|NP_189701.2| hypothetical protein; protein id: At3g30775.1, supported by cDNA:
gi_16226334, supported by cDNA: gi_1778014, supported by
cDNA: gi_1817543, supported by cDNA: gi_18377848
[Arabidopsis thaliana]
Length = 405
Score = 195 bits (496), Expect = 5e-49
Identities = 98/148 (66%), Positives = 117/148 (78%), Gaps = 1/148 (0%)
Frame = -3
Query: 760 MSSESKLAESLGYASPIHKTIKDTHNCFNGCSSFLLEKIANGPG-SVVLATHNIESGKLA 584
MSSE+ LA+SLG SP+H TI+DTH+C+N C +FL+EK +NG G VVLATHN +SG+LA
Sbjct: 257 MSSEASLADSLGCKSPVHDTIQDTHSCYNDCMTFLMEKASNGSGFGVVLATHNADSGRLA 316
Query: 583 AAKAYELGIGKVNHKMEFAQLYGMSDALSFGLSSAGFQVSKYMPFGPVEMVMPYLLRRAE 404
+ KA +LGI K N K+EFAQLYGMSDALSFGL AGF VSKYMPFGPV +PYLLRRA
Sbjct: 317 SRKASDLGIDKQNGKIEFAQLYGMSDALSFGLKRAGFNVSKYMPFGPVATAIPYLLRRAY 376
Query: 403 ENRGILAASGFDRQLIRKELGRRLKAAV 320
ENRG++A DRQL+R EL RRL A +
Sbjct: 377 ENRGMMATGAHDRQLMRMELKRRLIAGI 404
>dbj|BAA11682.1| proline oxidase precursor [Arabidopsis thaliana]
Length = 499
Score = 194 bits (494), Expect = 9e-49
Identities = 98/148 (66%), Positives = 116/148 (78%), Gaps = 1/148 (0%)
Frame = -3
Query: 760 MSSESKLAESLGYASPIHKTIKDTHNCFNGCSSFLLEKIANGPG-SVVLATHNIESGKLA 584
MSSE LA+SLG SP+H TI+DTH+C+N C +FL+EK +NG G VVLATHN +SG+LA
Sbjct: 351 MSSERSLADSLGCKSPVHDTIQDTHSCYNDCMTFLMEKASNGSGFGVVLATHNADSGRLA 410
Query: 583 AAKAYELGIGKVNHKMEFAQLYGMSDALSFGLSSAGFQVSKYMPFGPVEMVMPYLLRRAE 404
+ KA +LGI K N K+EFAQLYGMSDALSFGL AGF VSKYMPFGPV +PYLLRRA
Sbjct: 411 SRKASDLGIDKQNGKIEFAQLYGMSDALSFGLKRAGFNVSKYMPFGPVATAIPYLLRRAY 470
Query: 403 ENRGILAASGFDRQLIRKELGRRLKAAV 320
ENRG++A DRQL+R EL RRL A +
Sbjct: 471 ENRGMMATGAHDRQLMRMELKRRLIAGI 498
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 676,400,658
Number of Sequences: 1393205
Number of extensions: 15354772
Number of successful extensions: 37426
Number of sequences better than 10.0: 94
Number of HSP's better than 10.0 without gapping: 36297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37381
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 36974710344
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
