Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002008A_C01 KMC002008A_c01
(605 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||S33618 glutathione peroxidase (EC 1.11.1.9) - sweet orange 121 8e-27
sp|Q06652|GSHH_CITSI Probable phospholipid hydroperoxide glutath... 121 8e-27
gb|AAM47493.1| glutathione peroxidase 1 [Oryza sativa] 119 3e-26
gb|AAM88847.2|AF520911_1 putative glutathione peroxidase [Zea mays] 117 9e-26
gb|AAK63967.1| AT4g11600/T5C23_30 [Arabidopsis thaliana] gi|1865... 116 3e-25
>pir||S33618 glutathione peroxidase (EC 1.11.1.9) - sweet orange
Length = 167
Score = 121 bits (303), Expect = 8e-27
Identities = 58/63 (92%), Positives = 61/63 (96%)
Frame = -3
Query: 411 VDVNGDSAAPLYKYLKSSKGGLFGDKIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDLV 232
VDVNGD+AAPLYK+LKSSKGGLFGD IKWNFSKFLVDKEGNVVERYAPTTSPLSIEKD+
Sbjct: 102 VDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIK 161
Query: 231 KLL 223
KLL
Sbjct: 162 KLL 164
>sp|Q06652|GSHH_CITSI Probable phospholipid hydroperoxide glutathione peroxidase (PHGPx)
(Salt-associated protein) gi|296358|emb|CAA47018.1|
CIT-SAP [Citrus sinensis]
Length = 167
Score = 121 bits (303), Expect = 8e-27
Identities = 58/63 (92%), Positives = 61/63 (96%)
Frame = -3
Query: 411 VDVNGDSAAPLYKYLKSSKGGLFGDKIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDLV 232
VDVNGD+AAPLYK+LKSSKGGLFGD IKWNFSKFLVDKEGNVVERYAPTTSPLSIEKD+
Sbjct: 102 VDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIK 161
Query: 231 KLL 223
KLL
Sbjct: 162 KLL 164
>gb|AAM47493.1| glutathione peroxidase 1 [Oryza sativa]
Length = 168
Score = 119 bits (298), Expect = 3e-26
Identities = 56/65 (86%), Positives = 62/65 (95%)
Frame = -3
Query: 411 VDVNGDSAAPLYKYLKSSKGGLFGDKIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDLV 232
VDVNG++AAPLYKYLKS+KGGLFGD IKWNFSKFLVDKEG VV+RYAPTTSPLSIEKD+
Sbjct: 103 VDVNGNNAAPLYKYLKSNKGGLFGDSIKWNFSKFLVDKEGRVVDRYAPTTSPLSIEKDIK 162
Query: 231 KLLGA 217
KLLG+
Sbjct: 163 KLLGS 167
>gb|AAM88847.2|AF520911_1 putative glutathione peroxidase [Zea mays]
Length = 168
Score = 117 bits (294), Expect = 9e-26
Identities = 55/65 (84%), Positives = 61/65 (93%)
Frame = -3
Query: 411 VDVNGDSAAPLYKYLKSSKGGLFGDKIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDLV 232
VDVNGD+ AP+YK+LKSSKG LFGD IKWNFSKFLVDKEG+VVERYAPTTSPLSIEKD+
Sbjct: 103 VDVNGDNTAPIYKFLKSSKGSLFGDNIKWNFSKFLVDKEGHVVERYAPTTSPLSIEKDIK 162
Query: 231 KLLGA 217
KLLG+
Sbjct: 163 KLLGS 167
>gb|AAK63967.1| AT4g11600/T5C23_30 [Arabidopsis thaliana]
gi|18655355|gb|AAL76133.1| AT4g11600/T5C23_30
[Arabidopsis thaliana]
Length = 232
Score = 116 bits (290), Expect = 3e-25
Identities = 54/64 (84%), Positives = 61/64 (94%)
Frame = -3
Query: 411 VDVNGDSAAPLYKYLKSSKGGLFGDKIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDLV 232
VDVNGD AAP+YK+LKSSKGGLFGD IKWNF+KFLVDK+GNVV+R+APTTSPLSIEKD+
Sbjct: 166 VDVNGDKAAPVYKFLKSSKGGLFGDGIKWNFAKFLVDKDGNVVDRFAPTTSPLSIEKDVK 225
Query: 231 KLLG 220
KLLG
Sbjct: 226 KLLG 229
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 487,085,962
Number of Sequences: 1393205
Number of extensions: 10326240
Number of successful extensions: 24825
Number of sequences better than 10.0: 319
Number of HSP's better than 10.0 without gapping: 23757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24671
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23997478008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
