Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002001A_C01 KMC002001A_c01
(584 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||F84771 hypothetical protein At2g35680 [imported] - Arabidop... 88 7e-17
ref|NP_565816.1| expressed protein; protein id: At2g35680.1, sup... 88 7e-17
gb|AAK31276.1|AC079890_12 unknown protein [Oryza sativa] 62 7e-09
ref|NP_067689.1| Circadian Oscillatory Protein (SCOP) [Rattus n... 33 2.0
dbj|BAB64645.1| putative receptor-like protein kinase [Oryza sat... 33 3.4
>pir||F84771 hypothetical protein At2g35680 [imported] - Arabidopsis thaliana
Length = 383
Score = 88.2 bits (217), Expect = 7e-17
Identities = 53/106 (50%), Positives = 64/106 (60%), Gaps = 8/106 (7%)
Frame = -2
Query: 511 SRELVTFDDSSVVVVTEHDLEGYNPSCQSGTMP-----SEIWA---DLSVVYRVRVAGQA 356
S +V FDD S+VVVT DLEGYN +E+WA DLS+VYRV+V GQA
Sbjct: 289 SGNVVVFDDGSMVVVTHSDLEGYNDDDSRSRRSVKVNGNELWAAAADLSMVYRVKVVGQA 348
Query: 355 ALARISCLWLRYGSNQKISAENLSGESSCSVRTNHLGAISVDIHVY 218
A+ARISCLWL +QK+S +NLS +G ISVDI VY
Sbjct: 349 AMARISCLWLGLREDQKLSGKNLS-----------MGGISVDISVY 383
>ref|NP_565816.1| expressed protein; protein id: At2g35680.1, supported by cDNA:
gi_15450955, supported by cDNA: gi_17528969 [Arabidopsis
thaliana] gi|17528970|gb|AAL38695.1| unknown protein
[Arabidopsis thaliana] gi|20197531|gb|AAD15447.2|
expressed protein [Arabidopsis thaliana]
Length = 337
Score = 88.2 bits (217), Expect = 7e-17
Identities = 53/106 (50%), Positives = 64/106 (60%), Gaps = 8/106 (7%)
Frame = -2
Query: 511 SRELVTFDDSSVVVVTEHDLEGYNPSCQSGTMP-----SEIWA---DLSVVYRVRVAGQA 356
S +V FDD S+VVVT DLEGYN +E+WA DLS+VYRV+V GQA
Sbjct: 243 SGNVVVFDDGSMVVVTHSDLEGYNDDDSRSRRSVKVNGNELWAAAADLSMVYRVKVVGQA 302
Query: 355 ALARISCLWLRYGSNQKISAENLSGESSCSVRTNHLGAISVDIHVY 218
A+ARISCLWL +QK+S +NLS +G ISVDI VY
Sbjct: 303 AMARISCLWLGLREDQKLSGKNLS-----------MGGISVDISVY 337
>gb|AAK31276.1|AC079890_12 unknown protein [Oryza sativa]
Length = 362
Score = 61.6 bits (148), Expect = 7e-09
Identities = 35/96 (36%), Positives = 55/96 (56%), Gaps = 7/96 (7%)
Frame = -2
Query: 514 ASRELVTFDDSSVVVVTEHDLEGYNPSCQSGTMPSEIWADLSVVYRVRVAGQAALARISC 335
A+R L+ FD+ + V+V++ DLEGY+ + + S +W ++S+VYRV+ A QAA A S
Sbjct: 253 ATRNLIAFDEKTFVMVSKSDLEGYDADTLAVNVGSGLW-EISLVYRVQFASQAAFAGFSY 311
Query: 334 LWLRYGSNQK-------ISAENLSGESSCSVRTNHL 248
LW+R + +K + N G SCS+ L
Sbjct: 312 LWVRCRAPRKNKEALPVPESNNSVGSESCSLEAEQL 347
>ref|NP_067689.1| Circadian Oscillatory Protein (SCOP) [Rattus norvegicus]
gi|4884492|dbj|BAA77767.1| SCOP [Rattus norvegicus]
Length = 1696
Score = 33.5 bits (75), Expect = 2.0
Identities = 23/69 (33%), Positives = 34/69 (48%), Gaps = 5/69 (7%)
Frame = +3
Query: 351 NAACPATR-----TR*TTLKSAHISLGMVPD*QLGLYPSRSCSVTTTTELSSNVTSSREA 515
N + PA R R T LKS ++S LG +PS CS+ T EL+ + + +E
Sbjct: 638 NPSLPAARGLGELQRFTKLKSLNLSNN-----HLGAFPSAVCSIPTLAELNVSCNALQEV 692
Query: 516 AATLEALMN 542
A + A+ N
Sbjct: 693 PAAVGAMQN 701
>dbj|BAB64645.1| putative receptor-like protein kinase [Oryza sativa (japonica
cultivar-group)]
Length = 894
Score = 32.7 bits (73), Expect = 3.4
Identities = 28/91 (30%), Positives = 42/91 (45%), Gaps = 2/91 (2%)
Frame = -2
Query: 568 VGFAPTAD--LFIKASKVAAASRELVTFDDSSVVVVTEHDLEGYNPSCQSGTMPSEIWAD 395
V F P A F+ A +V + +L+ DSS+ ++ + NP+ MP
Sbjct: 176 VTFVPLAGRLAFVNAIEVVSVPDDLIGAADSSLST-SDSTGQQLNPA----VMP------ 224
Query: 394 LSVVYRVRVAGQAALARISCLWLRYGSNQKI 302
L VYRV V GQA LW + S+Q++
Sbjct: 225 LQTVYRVNVGGQAVAPDSDTLWREWTSDQQL 255
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 495,737,029
Number of Sequences: 1393205
Number of extensions: 10408914
Number of successful extensions: 23409
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 22773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23400
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21997688174
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
