Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002000A_C01 KMC002000A_c01
(608 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_193072.1| 3-hydroxyisobutyryl-coenzyme A hydrolase - like... 126 2e-28
ref|NP_189079.1| 3-hydroxyisobutyryl-coenzyme A hydrolase, putat... 116 3e-25
dbj|BAB02936.1| 3-hydroxyisobutyryl-coenzyme A hydrolase-like pr... 116 3e-25
ref|NP_420165.1| enoyl-CoA hydratase/isomerase family protein [C... 67 1e-10
ref|NP_055177.1| 3-hydroxyisobutyryl-Coenzyme A hydrolase [Homo ... 65 7e-10
>ref|NP_193072.1| 3-hydroxyisobutyryl-coenzyme A hydrolase - like protein; protein
id: At4g13360.1, supported by cDNA: 101316., supported
by cDNA: gi_14190484, supported by cDNA: gi_16323265
[Arabidopsis thaliana] gi|7484781|pir||T06293
3-hydroxyisobutyryl-coenzyme A hydrolase homolog
T9E8.100 - Arabidopsis thaliana
gi|4584541|emb|CAB40771.1| 3-hydroxyisobutyryl-coenzyme
A hydrolase-like protein [Arabidopsis thaliana]
gi|7268039|emb|CAB78378.1| 3-hydroxyisobutyryl-coenzyme
A hydrolase-like protein [Arabidopsis thaliana]
gi|14190485|gb|AAK55723.1|AF380642_1 AT4g13360/T9E8_100
[Arabidopsis thaliana] gi|16323266|gb|AAL15367.1|
AT4g13360/T9E8_100 [Arabidopsis thaliana]
gi|21536517|gb|AAM60849.1| 3-hydroxyisobutyryl-coenzyme
A hydrolase-like protein [Arabidopsis thaliana]
Length = 381
Score = 126 bits (317), Expect = 2e-28
Identities = 62/87 (71%), Positives = 72/87 (82%)
Frame = -3
Query: 606 PFSLFLTNKHFSAVASAVAKNDVELSTLNAVMKTEYRIALRSSLRHDFAEGVRAVLVDKD 427
PFSL+LT K+FS VA A +K + EL+TLN VMKTEYRIALRS+LR DFAEGVRAVL+DKD
Sbjct: 288 PFSLYLTQKYFSNVACAKSKPENELATLNGVMKTEYRIALRSALRGDFAEGVRAVLIDKD 347
Query: 426 QNPKWKPSRLEEVDPGEVEEVLKPLGP 346
QNPKW P+ +EEVD EVE + KPL P
Sbjct: 348 QNPKWNPTSIEEVDENEVEALFKPLSP 374
>ref|NP_189079.1| 3-hydroxyisobutyryl-coenzyme A hydrolase, putative; protein id:
At3g24360.1 [Arabidopsis thaliana]
Length = 380
Score = 116 bits (290), Expect = 3e-25
Identities = 57/87 (65%), Positives = 68/87 (77%)
Frame = -3
Query: 606 PFSLFLTNKHFSAVASAVAKNDVELSTLNAVMKTEYRIALRSSLRHDFAEGVRAVLVDKD 427
PFSL+LT+K+FS VA A K + ++TLN VM TEYRIALRS+LR DF EGVRAVL DKD
Sbjct: 287 PFSLYLTHKYFSKVACAKGKTNNAMATLNGVMITEYRIALRSALRSDFTEGVRAVLTDKD 346
Query: 426 QNPKWKPSRLEEVDPGEVEEVLKPLGP 346
QNPKWKP+ L+EVD EV+ + PL P
Sbjct: 347 QNPKWKPASLDEVDETEVDALFMPLSP 373
>dbj|BAB02936.1| 3-hydroxyisobutyryl-coenzyme A hydrolase-like protein [Arabidopsis
thaliana]
Length = 418
Score = 116 bits (290), Expect = 3e-25
Identities = 57/87 (65%), Positives = 68/87 (77%)
Frame = -3
Query: 606 PFSLFLTNKHFSAVASAVAKNDVELSTLNAVMKTEYRIALRSSLRHDFAEGVRAVLVDKD 427
PFSL+LT+K+FS VA A K + ++TLN VM TEYRIALRS+LR DF EGVRAVL DKD
Sbjct: 325 PFSLYLTHKYFSKVACAKGKTNNAMATLNGVMITEYRIALRSALRSDFTEGVRAVLTDKD 384
Query: 426 QNPKWKPSRLEEVDPGEVEEVLKPLGP 346
QNPKWKP+ L+EVD EV+ + PL P
Sbjct: 385 QNPKWKPASLDEVDETEVDALFMPLSP 411
>ref|NP_420165.1| enoyl-CoA hydratase/isomerase family protein [Caulobacter
crescentus CB15] gi|25397322|pir||A87417 enoyl-CoA
hydratase/isomerase family protein [imported] -
Caulobacter crescentus gi|13422701|gb|AAK23333.1|
enoyl-CoA hydratase/isomerase family protein
[Caulobacter crescentus CB15]
Length = 350
Score = 67.4 bits (163), Expect = 1e-10
Identities = 31/58 (53%), Positives = 40/58 (68%)
Frame = -3
Query: 513 MKTEYRIALRSSLRHDFAEGVRAVLVDKDQNPKWKPSRLEEVDPGEVEEVLKPLGPPG 340
M EYRI R ++HDF EGVRAV+VDKD P+W P+R+E+V + E+ PL PPG
Sbjct: 287 MAMEYRIGSRVVMKHDFIEGVRAVIVDKDNAPRWSPARVEDVTDAALAEIFAPL-PPG 343
>ref|NP_055177.1| 3-hydroxyisobutyryl-Coenzyme A hydrolase [Homo sapiens]
gi|3320120|gb|AAC52114.1| 3-hydroxyisobutyryl-coenzyme A
hydrolase [Homo sapiens]
Length = 381
Score = 65.1 bits (157), Expect = 7e-10
Identities = 31/60 (51%), Positives = 40/60 (66%)
Frame = -3
Query: 528 TLNAVMKTEYRIALRSSLRHDFAEGVRAVLVDKDQNPKWKPSRLEEVDPGEVEEVLKPLG 349
TL V+ EYR++ HDF EGVRAVL+DKDQ+PKWKP+ L+EV ++ K LG
Sbjct: 316 TLQEVLTMEYRLSQACMRGHDFHEGVRAVLIDKDQSPKWKPADLKEVTEEDLNNHFKSLG 375
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 540,232,122
Number of Sequences: 1393205
Number of extensions: 12221531
Number of successful extensions: 35943
Number of sequences better than 10.0: 85
Number of HSP's better than 10.0 without gapping: 34526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35911
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24283162270
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
