Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001998A_C02 KMC001998A_c02
(629 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAN74842.1| Unknown protein [Oryza sativa (japonica cultivar-... 129 3e-29
ref|NP_194078.2| expressed protein; protein id: At4g23470.1, sup... 117 1e-25
gb|AAM63607.1| unknown [Arabidopsis thaliana] 117 1e-25
ref|NP_176568.1| unknown protein; protein id: At1g63830.1, suppo... 108 4e-23
ref|NP_194079.1| putative protein [Arabidopsis thaliana] gi|7485... 99 5e-20
>gb|AAN74842.1| Unknown protein [Oryza sativa (japonica cultivar-group)]
Length = 241
Score = 129 bits (324), Expect = 3e-29
Identities = 69/102 (67%), Positives = 72/102 (69%), Gaps = 7/102 (6%)
Frame = -2
Query: 619 MQIQHKVEMDKRDGMFGPQPAMAVPPAQQMSRIDQPVPPSVGYAPQPAPYGQPAPQPAPY 440
+Q QHK+EMDKRDG FGPQP MAVPP QQMSRIDQP+PP VGY PQ YGQ PY
Sbjct: 134 VQTQHKIEMDKRDGKFGPQP-MAVPPMQQMSRIDQPIPPPVGYTPQQPAYGQ------PY 186
Query: 439 GQPYGYPPAPPPAQGYPATGYPPA------AYPPPG-YPPSG 335
G GYPPA PPAQGYP YPPA AYPPPG YPP G
Sbjct: 187 G---GYPPA-PPAQGYPPAAYPPAGYPQGGAYPPPGSYPPPG 224
>ref|NP_194078.2| expressed protein; protein id: At4g23470.1, supported by cDNA:
25694., supported by cDNA: gi_17065515, supported by
cDNA: gi_20148522 [Arabidopsis thaliana]
gi|17065516|gb|AAL32912.1| Unknown protein [Arabidopsis
thaliana] gi|20148523|gb|AAM10152.1| unknown protein
[Arabidopsis thaliana]
Length = 255
Score = 117 bits (294), Expect = 1e-25
Identities = 63/100 (63%), Positives = 68/100 (68%), Gaps = 5/100 (5%)
Frame = -2
Query: 628 CACMQIQHKVEMDKRDGMFGPQPAMAVPPAQQMSRIDQPVPPSVGYAPQ----PAPYGQP 461
CACMQ QHK+EMDKRDG FGPQP MAVPPAQQMSR DQ PP+VGY PQ P+ Y Q
Sbjct: 162 CACMQTQHKMEMDKRDGKFGPQP-MAVPPAQQMSRFDQATPPAVGYPPQQGYPPSGYPQH 220
Query: 460 APQPAPYGQPYGYPPAPPPAQGYPATGYPPAAY-PPPGYP 344
PQ P P GYP PPP+ + YPP AY PPP YP
Sbjct: 221 PPQGYP---PSGYPQNPPPS---AYSQYPPGAYPPPPAYP 254
>gb|AAM63607.1| unknown [Arabidopsis thaliana]
Length = 247
Score = 117 bits (294), Expect = 1e-25
Identities = 63/100 (63%), Positives = 68/100 (68%), Gaps = 5/100 (5%)
Frame = -2
Query: 628 CACMQIQHKVEMDKRDGMFGPQPAMAVPPAQQMSRIDQPVPPSVGYAPQ----PAPYGQP 461
CACMQ QHK+EMDKRDG FGPQP MAVPPAQQMSR DQ PP+VGY PQ P+ Y Q
Sbjct: 154 CACMQTQHKMEMDKRDGKFGPQP-MAVPPAQQMSRFDQATPPAVGYPPQQGYPPSGYPQH 212
Query: 460 APQPAPYGQPYGYPPAPPPAQGYPATGYPPAAY-PPPGYP 344
PQ P P GYP PPP+ + YPP AY PPP YP
Sbjct: 213 PPQGYP---PSGYPQNPPPS---AYSQYPPGAYPPPPAYP 246
>ref|NP_176568.1| unknown protein; protein id: At1g63830.1, supported by cDNA:
gi_19424092 [Arabidopsis thaliana]
gi|25404446|pir||D96663 unknown protein, 55304-53614
[imported] - Arabidopsis thaliana
gi|12325014|gb|AAG52456.1|AC010852_13 unknown protein;
55304-53614 [Arabidopsis thaliana]
gi|19424093|gb|AAL87329.1| unknown protein [Arabidopsis
thaliana] gi|21436183|gb|AAM51379.1| unknown protein
[Arabidopsis thaliana]
Length = 232
Score = 108 bits (271), Expect = 4e-23
Identities = 56/95 (58%), Positives = 59/95 (61%)
Frame = -2
Query: 628 CACMQIQHKVEMDKRDGMFGPQPAMAVPPAQQMSRIDQPVPPSVGYAPQPAPYGQPAPQP 449
CACMQ QHK+EMDKRDG+FG QP M VPPAQQMSR DQPVPP VGY
Sbjct: 164 CACMQTQHKLEMDKRDGVFGSQP-MGVPPAQQMSRFDQPVPPPVGY-------------- 208
Query: 448 APYGQPYGYPPAPPPAQGYPATGYPPAAYPPPGYP 344
P YPP PA GYPPA+YPPPGYP
Sbjct: 209 -----PQSYPP--------PAQGYPPASYPPPGYP 230
>ref|NP_194079.1| putative protein [Arabidopsis thaliana] gi|7485554|pir||T05386
hypothetical protein F16G20.180 - Arabidopsis thaliana
gi|3451073|emb|CAA20469.1| putative protein [Arabidopsis
thaliana] gi|7269196|emb|CAB79303.1| putative protein
[Arabidopsis thaliana]
Length = 85
Score = 99.0 bits (245), Expect = 5e-20
Identities = 55/91 (60%), Positives = 60/91 (65%), Gaps = 5/91 (5%)
Frame = -2
Query: 601 VEMDKRDGMFGPQPAMAVPPAQQMSRIDQPVPPSVGYAPQ----PAPYGQPAPQPAPYGQ 434
+EMDKRDG FGPQP MAVPPAQQMSR DQ PP+VGY PQ P+ Y Q PQ P
Sbjct: 1 MEMDKRDGKFGPQP-MAVPPAQQMSRFDQATPPAVGYPPQQGYPPSGYPQHPPQGYP--- 56
Query: 433 PYGYPPAPPPAQGYPATGYPPAAY-PPPGYP 344
P GYP PPP+ + YPP AY PPP YP
Sbjct: 57 PSGYPQNPPPS---AYSQYPPGAYPPPPAYP 84
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 640,424,059
Number of Sequences: 1393205
Number of extensions: 18217675
Number of successful extensions: 246942
Number of sequences better than 10.0: 6554
Number of HSP's better than 10.0 without gapping: 83939
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158276
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25870486187
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
