Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001996A_C03 KMC001996A_c03
(648 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_566596.1| expressed protein; protein id: At3g18050.1, sup... 104 1e-21
ref|NP_567797.1| expressed protein; protein id: At4g28100.1, sup... 77 2e-13
gb|AAM65702.1| unknown [Arabidopsis thaliana] 77 2e-13
gb|EAA19034.1| hypothetical protein [Plasmodium yoelii yoelii] 35 1.1
ref|XP_204552.1| similar to ultra-high sulphur keratin [Mus musc... 35 1.1
>ref|NP_566596.1| expressed protein; protein id: At3g18050.1, supported by cDNA:
gi_15451205 [Arabidopsis thaliana]
gi|9294060|dbj|BAB02017.1|
emb|CAB36779.1~gene_id:MRC8.3~similar to unknown protein
[Arabidopsis thaliana] gi|15451206|gb|AAK96874.1|
Unknown protein [Arabidopsis thaliana]
gi|23197698|gb|AAN15376.1| Unknown protein [Arabidopsis
thaliana]
Length = 335
Score = 104 bits (259), Expect = 1e-21
Identities = 62/104 (59%), Positives = 73/104 (69%), Gaps = 4/104 (3%)
Frame = -2
Query: 644 KKTS---NSSKLE-DRTTKIHNQDCELMGLTWLLNKNRTAYMHTVTVVLRALMLSTDGSD 477
KKTS N SK + +RT K+HN+DC LMGLTWLL KNRTAY TVT VLRA+ML+ DG
Sbjct: 226 KKTSGTRNPSKEDRNRTAKMHNKDCVLMGLTWLLAKNRTAYFPTVTSVLRAVMLNHDGV- 284
Query: 476 PQSCTLNSDGMPLAVDSSEMYDQSSSAKLQGPIYLSLLFLYLLL 345
P+SC L SDGMPLAVDSSE + S LQ P +L LY ++
Sbjct: 285 PRSCALGSDGMPLAVDSSE-FSNGSPTSLQYPHHLVHFLLYSVI 327
>ref|NP_567797.1| expressed protein; protein id: At4g28100.1, supported by cDNA:
42155. [Arabidopsis thaliana] gi|7486959|pir||T02911
hypothetical protein T13J8.210 - Arabidopsis thaliana
gi|4455369|emb|CAB36779.1| hypothetical protein
[Arabidopsis thaliana] gi|7269664|emb|CAB79612.1|
hypothetical protein [Arabidopsis thaliana]
Length = 304
Score = 77.4 bits (189), Expect = 2e-13
Identities = 46/105 (43%), Positives = 66/105 (62%), Gaps = 5/105 (4%)
Frame = -2
Query: 647 KKKTSNSSKLEDRTTKIHNQDCELMGLTWLLNKNRTAYMHTVTVVLRALMLSTDGSDPQS 468
K + N +R TK+ ++DC+LMGLTWLL +N+TAY+ TV+ VLRA+M S
Sbjct: 200 KVRGGNKKTTTERGTKMMSKDCQLMGLTWLLARNKTAYIPTVSAVLRAIMYSPHPPHLNK 259
Query: 467 CTLNSDGMPLAVDSSEMYDQ-SSSAKLQGPI-YLSL---LFLYLL 348
C+ + + MPLAVDS + SSS+ L G + +L L +FL+LL
Sbjct: 260 CSPDQENMPLAVDSLQFQKSFSSSSHLFGVLPFLPLVLCIFLFLL 304
>gb|AAM65702.1| unknown [Arabidopsis thaliana]
Length = 304
Score = 77.4 bits (189), Expect = 2e-13
Identities = 46/105 (43%), Positives = 66/105 (62%), Gaps = 5/105 (4%)
Frame = -2
Query: 647 KKKTSNSSKLEDRTTKIHNQDCELMGLTWLLNKNRTAYMHTVTVVLRALMLSTDGSDPQS 468
K + N +R TK+ ++DC+LMGLTWLL +N+TAY+ TV+ VLRA+M S
Sbjct: 200 KVRGGNKKTTTERGTKMMSKDCQLMGLTWLLARNKTAYIPTVSAVLRAIMYSPHPPHLNK 259
Query: 467 CTLNSDGMPLAVDSSEMYDQ-SSSAKLQGPI-YLSL---LFLYLL 348
C+ + + MPLAVDS + SSS+ L G + +L L +FL+LL
Sbjct: 260 CSPDQENMPLAVDSLQFQKSFSSSSHLFGVLPFLPLVLCIFLFLL 304
>gb|EAA19034.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 676
Score = 34.7 bits (78), Expect = 1.1
Identities = 26/72 (36%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Frame = -2
Query: 206 NFFINFYLNFIFRAF*DVKSFIKLS*SICIASNSN*LVLYGPFIL*KKEIFIV----SKK 39
N INFYLN + F + K +I + S I NS + L P + K F + S K
Sbjct: 301 NMIINFYLNLLIEKFLEKKKYIHIDDSYLI--NSYNVNLVNPLNIEIKRYFYIYENNSIK 358
Query: 38 KKKKLEGGPYPF 3
KKK+L Y F
Sbjct: 359 KKKELISNGYKF 370
>ref|XP_204552.1| similar to ultra-high sulphur keratin [Mus musculus]
Length = 267
Score = 34.7 bits (78), Expect = 1.1
Identities = 22/68 (32%), Positives = 32/68 (46%), Gaps = 1/68 (1%)
Frame = -3
Query: 526 QLLWFFVL*C*ALMARTHNHVL*TVMECLLLLIPQKCMISLHQPNCKDQSI-FLCCFYIC 350
QLLW +L A NH+L ++ +L P+ C+ S QP C+ CC C
Sbjct: 70 QLLWLQLL-----PALLSNHLLQDLLPAMLCCQPRCCISSCCQPCCRPSCCQSSCCKPCC 124
Query: 349 Y*VCISLC 326
C++LC
Sbjct: 125 QPFCLNLC 132
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 540,501,816
Number of Sequences: 1393205
Number of extensions: 11036671
Number of successful extensions: 23507
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 22219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23361
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27576232529
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
