Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001995A_C01 KMC001995A_c01
(478 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_650474.1| CG14872-PB [Drosophila melanogaster] gi|7300035... 35 0.41
pir||T06807 nucleosome assembly protein 1 - garden pea gi|177837... 33 1.2
ref|NP_032312.1| histamine receptor H 2 [Mus musculus] gi|302395... 32 2.7
gb|ZP_00049844.1| hypothetical protein [Magnetospirillum magneto... 32 2.7
ref|NP_059461.1| NADH dehydrogenase subunit 4L [Paragonimus west... 32 2.7
>ref|NP_650474.1| CG14872-PB [Drosophila melanogaster] gi|7300035|gb|AAF55206.1|
CG14872-PB [Drosophila melanogaster]
Length = 310
Score = 35.0 bits (79), Expect = 0.41
Identities = 16/64 (25%), Positives = 32/64 (50%)
Frame = -3
Query: 437 SRSSLTQRVNHAIEFHLCWRMSEEKVGFMWFLFAQFNFFYPNLSSLKFKSLFSYFAPVWG 258
S ++LT +++ + W +S E V F W Q+ F+P+ S + +K + + + +
Sbjct: 19 SGNNLTLDLSYVTILNNSWSLSREAVSFPWNNSTQYGIFHPDASKVSYKLVTTDYVSIAV 78
Query: 257 ECRY 246
C Y
Sbjct: 79 VCGY 82
>pir||T06807 nucleosome assembly protein 1 - garden pea
gi|1778378|gb|AAB72115.1| NAP1Ps [Pisum sativum]
Length = 366
Score = 33.5 bits (75), Expect = 1.2
Identities = 13/14 (92%), Positives = 13/14 (92%)
Frame = -2
Query: 477 DGPQGERPPECKQQ 436
DG QGERPPECKQQ
Sbjct: 353 DGQQGERPPECKQQ 366
>ref|NP_032312.1| histamine receptor H 2 [Mus musculus]
gi|3023953|sp|P97292|HH2R_MOUSE Histamine H2 receptor
(H2R) (Gastric receptor I) gi|1731687|dbj|BAA08792.1|
murine histamine H2 receptor [Mus musculus]
Length = 358
Score = 32.3 bits (72), Expect = 2.7
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 8/75 (10%)
Frame = -1
Query: 391 ICVGECLKRKWDSCGFCLLNSIFFTQILVV*NLNPFSPILR-----QFGE---NVVIYIG 236
+C+ L R+ S C + S+ T +L+ + PFS I + +FG+ N+ +
Sbjct: 39 VCLAVSLNRRLRSLTNCFIVSLAATDLLLGLLVMPFSAIYQLSFKWRFGQVFCNIYTSLD 98
Query: 235 RMLCLPFCLNLYVVS 191
MLC LNL+++S
Sbjct: 99 VMLCTASILNLFMIS 113
>gb|ZP_00049844.1| hypothetical protein [Magnetospirillum magnetotacticum]
Length = 282
Score = 32.3 bits (72), Expect = 2.7
Identities = 19/46 (41%), Positives = 27/46 (58%)
Frame = -1
Query: 280 PILRQFGENVVIYIGRMLCLPFCLNLYVVSYT*NIYLVVPLHLVLS 143
PI +FG +VI+I + LPF L L VS + L VP+ L+L+
Sbjct: 164 PIGDRFGRKLVIWISILGVLPFSLVLPHVSLAWTVVLSVPIGLILA 209
>ref|NP_059461.1| NADH dehydrogenase subunit 4L [Paragonimus westermani]
gi|8132794|gb|AAF73396.1| NADH dehydrogenase subunit 4L
[Paragonimus westermani] gi|23194440|gb|AAN15172.1| NADH
dehydrogenase subunit 4L [Paragonimus westermani]
Length = 85
Score = 32.3 bits (72), Expect = 2.7
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Frame = -1
Query: 352 CGFCLLNSIFFTQILVV*NLNP---FSPILRQFGENVVIYIGRML 227
CGF L S F ++VV N N FS I +Q+GE+ +++I M+
Sbjct: 13 CGFVLSLSRFLNCLIVVENFNVLLLFSAIFQQWGESHILFIALMV 57
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 385,985,715
Number of Sequences: 1393205
Number of extensions: 7855627
Number of successful extensions: 21871
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 21206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21856
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13106568690
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
