Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001994A_C02 KMC001994A_c02
(522 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_194630.1| AIM1 protein; protein id: At4g29010.1, supporte... 129 2e-29
gb|AAL35606.1|AF442962_1 peroxisomal multifunctional protein [Or... 128 3e-29
emb|CAA55910.1| protein MFP-b [Cucumis sativus] 116 2e-25
pir||T10464 fatty acid oxidation tetrafunctional protein, glyoxy... 116 2e-25
dbj|BAB63893.1| putative tetrafunctional protein of glyoxysomal ... 114 5e-25
>ref|NP_194630.1| AIM1 protein; protein id: At4g29010.1, supported by cDNA:
gi_16648890, supported by cDNA: gi_18175605, supported
by cDNA: gi_20465648 [Arabidopsis thaliana]
gi|7436974|pir||T08956 AIM1 protein - Arabidopsis
thaliana gi|4337025|gb|AAD18041.1| AIM1 protein
[Arabidopsis thaliana] gi|4972047|emb|CAB43915.1| AIM1
protein [Arabidopsis thaliana]
gi|7269799|emb|CAB79659.1| AIM1 protein [Arabidopsis
thaliana] gi|16648891|gb|AAL24297.1| AIM1 protein
[Arabidopsis thaliana] gi|18175606|gb|AAL59895.1|
putative AIM1 protein [Arabidopsis thaliana]
gi|20465649|gb|AAM20293.1| putative AIM1 protein
[Arabidopsis thaliana]
Length = 721
Score = 129 bits (324), Expect = 2e-29
Identities = 62/87 (71%), Positives = 72/87 (82%)
Frame = -2
Query: 521 NESCRILEEGVVIRASDLHIASVLGMSFPSYRGGIVFWADMVGANHVYSSLKKWTELYGN 342
NE+CR+L+EGVVIRASDL IASVLGMSFPSYRGGIVFWAD VG ++Y LKK +E YG+
Sbjct: 634 NEACRVLDEGVVIRASDLDIASVLGMSFPSYRGGIVFWADTVGPKYIYERLKKLSETYGS 693
Query: 341 FFKPSRYLEERALKGIPLSAPASSNPR 261
FFKPSRYLEERA+ G+ LS SS +
Sbjct: 694 FFKPSRYLEERAMNGMLLSESKSSRSK 720
>gb|AAL35606.1|AF442962_1 peroxisomal multifunctional protein [Oryza sativa]
Length = 725
Score = 128 bits (322), Expect = 3e-29
Identities = 57/93 (61%), Positives = 77/93 (82%), Gaps = 1/93 (1%)
Frame = -2
Query: 521 NESCRILEEGVVIRASDLHIASVLGMSFPSYRGGIVFWADMVGANHVYSSLKKWTELYGN 342
NE+CR+++E VVIRASDL IAS+LGM FP +RGG+VFWAD +GA +++S L KWTE+YG+
Sbjct: 633 NEACRVMDENVVIRASDLDIASILGMGFPKFRGGLVFWADTIGAPYIHSKLSKWTEIYGD 692
Query: 341 FFKPSRYLEERALKGIPLSAP-ASSNPRSKARL 246
FFKPS YLE+RA + +PLSAP A+ S++R+
Sbjct: 693 FFKPSSYLEDRAKRSLPLSAPNATQQASSRSRM 725
>emb|CAA55910.1| protein MFP-b [Cucumis sativus]
Length = 633
Score = 116 bits (290), Expect = 2e-25
Identities = 50/88 (56%), Positives = 70/88 (78%), Gaps = 1/88 (1%)
Frame = -2
Query: 521 NESCRILEEGVVIRASDLHIASVLGMSFPSYRGGIVFWADMVGANHVYSSLKKWTELYGN 342
NE+CR+L EG+ ++A+DL IA V+GM FPSYRGG++FWAD +G+N++YS L++W++ YG
Sbjct: 545 NEACRVLAEGIAVKAADLDIAGVMGMGFPSYRGGLMFWADSLGSNYIYSRLEEWSKQYGG 604
Query: 341 FFKPSRYLEERALKGIPLSAPAS-SNPR 261
FFKP YL ERA++G LSAP + PR
Sbjct: 605 FFKPCGYLAERAVQGATLSAPGGHAKPR 632
>pir||T10464 fatty acid oxidation tetrafunctional protein, glyoxysomal -
cucumber gi|551428|emb|CAA55630.1| tetrafunctional
protein [Cucumis sativus]
Length = 725
Score = 116 bits (290), Expect = 2e-25
Identities = 50/88 (56%), Positives = 70/88 (78%), Gaps = 1/88 (1%)
Frame = -2
Query: 521 NESCRILEEGVVIRASDLHIASVLGMSFPSYRGGIVFWADMVGANHVYSSLKKWTELYGN 342
NE+CR+L EG+ ++A+DL IA V+GM FPSYRGG++FWAD +G+N++YS L++W++ YG
Sbjct: 637 NEACRVLAEGIAVKAADLDIAGVMGMGFPSYRGGLMFWADSLGSNYIYSRLEEWSKQYGG 696
Query: 341 FFKPSRYLEERALKGIPLSAPAS-SNPR 261
FFKP YL ERA++G LSAP + PR
Sbjct: 697 FFKPCGYLAERAVQGATLSAPGGHAKPR 724
>dbj|BAB63893.1| putative tetrafunctional protein of glyoxysomal fatty acid
beta-oxidation [Oryza sativa (japonica cultivar-group)]
gi|21104813|dbj|BAB93398.1| putative tetrafunctional
protein of glyoxysomal fatty acid beta-oxidation [Oryza
sativa (japonica cultivar-group)]
Length = 727
Score = 114 bits (286), Expect = 5e-25
Identities = 51/92 (55%), Positives = 68/92 (73%)
Frame = -2
Query: 521 NESCRILEEGVVIRASDLHIASVLGMSFPSYRGGIVFWADMVGANHVYSSLKKWTELYGN 342
NE+CR+L+EG+ ++ASDL IAS+ GM FP YRGGI+FWAD +GA +++ L+ W + Y +
Sbjct: 639 NEACRVLDEGIAVKASDLDIASIFGMGFPPYRGGIMFWADSIGAKYIHDKLEVWAKRYSD 698
Query: 341 FFKPSRYLEERALKGIPLSAPASSNPRSKARL 246
FKP YL ERA G+PLSAPA + KARL
Sbjct: 699 IFKPCSYLAERAANGVPLSAPAK---QVKARL 727
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 462,290,677
Number of Sequences: 1393205
Number of extensions: 9925954
Number of successful extensions: 21048
Number of sequences better than 10.0: 133
Number of HSP's better than 10.0 without gapping: 20613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21043
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16731298976
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
