Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001993A_C01 KMC001993A_c01
(451 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC03759.1| unnamed protein product [Homo sapiens] 32 1.3
gb|EAA38116.1| GLP_44_12377_6348 [Giardia lamblia ATCC 50803] 31 3.0
dbj|BAC29318.1| unnamed protein product [Mus musculus] 31 3.9
ref|NP_082475.1| RIKEN cDNA 2410003I07 [Mus musculus] gi|1284574... 31 3.9
gb|AAL11997.1|AF378760_1 tumor endothelial marker 7 precursor [M... 30 6.7
>dbj|BAC03759.1| unnamed protein product [Homo sapiens]
Length = 557
Score = 32.3 bits (72), Expect = 1.3
Identities = 20/55 (36%), Positives = 30/55 (54%)
Frame = +3
Query: 102 SNAEVPISKSKCGWNIHVKRLD*SQSTYTNCYLNRMCNSCLPTNWLMSPTNKYKL 266
S A +P S S GW + Q+ YT +LN++ + +P N L +PT+K KL
Sbjct: 87 STANLPNSSSTLGW------VTPCQTPYTQYHLNKLDQNIIPEN-LPAPTDKCKL 134
>gb|EAA38116.1| GLP_44_12377_6348 [Giardia lamblia ATCC 50803]
Length = 2009
Score = 31.2 bits (69), Expect = 3.0
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +3
Query: 135 CGWNIHVKRLD*SQSTYTNCYLNRMCNSCLPTNWLMSPT 251
CG+ I + LD S Y NC + +S LP W++S T
Sbjct: 466 CGFGISICCLDLSNHPYFNCAVPATSSSSLPYVWVVSDT 504
>dbj|BAC29318.1| unnamed protein product [Mus musculus]
Length = 507
Score = 30.8 bits (68), Expect = 3.9
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 9/59 (15%)
Frame = +3
Query: 84 AFLNLQSNAEVPISKSKCGWNIHVKRLD*SQSTYTN---------CYLNRMCNSCLPTN 233
AF+ L S+ EVP S+ + + H LD S+ T T+ C ++ C++C+ +N
Sbjct: 267 AFMILNSSPEVPASQRRTIFEYHRVELDSSKITTTSAVEFTPLPTCLQHQSCDTCVSSN 325
>ref|NP_082475.1| RIKEN cDNA 2410003I07 [Mus musculus] gi|12845748|dbj|BAB26881.1|
unnamed protein product [Mus musculus]
Length = 500
Score = 30.8 bits (68), Expect = 3.9
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 9/59 (15%)
Frame = +3
Query: 84 AFLNLQSNAEVPISKSKCGWNIHVKRLD*SQSTYTN---------CYLNRMCNSCLPTN 233
AF+ L S+ EVP S+ + + H LD S+ T T+ C ++ C++C+ +N
Sbjct: 260 AFMILNSSPEVPASQRRTIFEYHRVELDSSKITTTSAVEFTPLPTCLQHQSCDTCVSSN 318
>gb|AAL11997.1|AF378760_1 tumor endothelial marker 7 precursor [Mus musculus]
Length = 500
Score = 30.0 bits (66), Expect = 6.7
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 9/59 (15%)
Frame = +3
Query: 84 AFLNLQSNAEVPISKSKCGWNIHVKRLD*SQSTYTN---------CYLNRMCNSCLPTN 233
AF+ L S+ EVP S+ + + H LD S+ T T+ C ++ C++C+ +N
Sbjct: 260 AFMILNSSPEVPESQRRTIFEYHRVELDSSKITTTSAVEFTPLPTCLQHQSCDTCVSSN 318
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 347,021,596
Number of Sequences: 1393205
Number of extensions: 6807288
Number of successful extensions: 11945
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11943
length of database: 448,689,247
effective HSP length: 125
effective length of database: 274,538,622
effective search space used: 6588926928
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
