Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001992A_C01 KMC001992A_c01
(449 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO12660.1| polymerase [Hepatitis B virus] 33 0.79
gb|AAO12653.1| polymerase [Hepatitis B virus] 32 1.3
sp|P03155|DPOL_HPBVZ P protein [Includes: DNA-directed DNA polym... 32 1.8
ref|NP_651118.1| CG6697-PA [Drosophila melanogaster] gi|4972728|... 32 2.3
dbj|BAB17983.1| polymerase [Hepatitis B virus] 32 2.3
>gb|AAO12660.1| polymerase [Hepatitis B virus]
Length = 832
Score = 33.1 bits (74), Expect = 0.79
Identities = 21/67 (31%), Positives = 32/67 (47%)
Frame = +2
Query: 239 YFHMP*FPSNHVTSPPLKNASCGLFRCVMRITWNYGLTISQHHMILQLVQQCSLAQQIQF 418
++H+P P+ P L S GL R V+R++ N + +QH + L CS +
Sbjct: 423 FYHLPLHPA---AMPHLLVGSSGLSRYVVRLSSNSRINNNQHGTLQNLHDSCSRNLYVSL 479
Query: 419 LLLAPGF 439
LLL F
Sbjct: 480 LLLYQTF 486
>gb|AAO12653.1| polymerase [Hepatitis B virus]
Length = 832
Score = 32.3 bits (72), Expect = 1.3
Identities = 19/63 (30%), Positives = 31/63 (49%)
Frame = +2
Query: 239 YFHMP*FPSNHVTSPPLKNASCGLFRCVMRITWNYGLTISQHHMILQLVQQCSLAQQIQF 418
++H+P P+ P L S GL R V+R++ N + +QH + L CS +
Sbjct: 423 FYHLPLHPA---AMPHLLVGSSGLSRYVVRLSSNSRINNNQHGTLQNLHDSCSRQLYVSL 479
Query: 419 LLL 427
+LL
Sbjct: 480 MLL 482
>sp|P03155|DPOL_HPBVZ P protein [Includes: DNA-directed DNA polymerase ; RNA-directed DNA
polymerase ; Ribonuclease H ] gi|67001|pir||JDVLVH
DNA-directed DNA polymerase (EC 2.7.7.7) - hepatitis B
virus (subtype adyw) (fragment)
Length = 750
Score = 32.0 bits (71), Expect = 1.8
Identities = 21/67 (31%), Positives = 31/67 (45%)
Frame = +2
Query: 239 YFHMP*FPSNHVTSPPLKNASCGLFRCVMRITWNYGLTISQHHMILQLVQQCSLAQQIQF 418
++H+P P+ P L S GL R V R++ N + QH ++ L CS +
Sbjct: 423 FYHLPLHPA---AMPHLLVGSSGLSRYVARLSSNSRIINHQHGILQNLHDSCSRNLYVSL 479
Query: 419 LLLAPGF 439
LLL F
Sbjct: 480 LLLYKTF 486
>ref|NP_651118.1| CG6697-PA [Drosophila melanogaster] gi|4972728|gb|AAD34759.1|
unknown [Drosophila melanogaster]
gi|7300952|gb|AAF56091.1| CG6697-PA [Drosophila
melanogaster]
Length = 320
Score = 31.6 bits (70), Expect = 2.3
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Frame = -1
Query: 449 YDHRSPVPKEGTEFVVP--ESIVERAEESYDVVKWSSHS 339
+DHRSP + GTE + P + A E YD+V WS+ S
Sbjct: 152 FDHRSPA-ETGTELMRPYLHEFLTSAYEDYDIVIWSATS 189
>dbj|BAB17983.1| polymerase [Hepatitis B virus]
Length = 843
Score = 31.6 bits (70), Expect = 2.3
Identities = 20/63 (31%), Positives = 29/63 (45%)
Frame = +2
Query: 239 YFHMP*FPSNHVTSPPLKNASCGLFRCVMRITWNYGLTISQHHMILQLVQQCSLAQQIQF 418
++H+P P+ P L SCGL R V R++ + QH + L CS +
Sbjct: 434 FYHLPLHPA---AMPHLLVGSCGLSRYVARLSSTSRIHNHQHGTMQNLHNSCSRNLYVSL 490
Query: 419 LLL 427
LLL
Sbjct: 491 LLL 493
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 379,749,172
Number of Sequences: 1393205
Number of extensions: 7459799
Number of successful extensions: 15872
Number of sequences better than 10.0: 145
Number of HSP's better than 10.0 without gapping: 14982
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15871
length of database: 448,689,247
effective HSP length: 125
effective length of database: 274,538,622
effective search space used: 6588926928
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
