Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001989A_C01 KMC001989A_c01
(538 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAC97601.1| pyruvate dehydrogenase kinase [Arabidopsis thalia... 213 1e-54
ref|NP_187300.2| putative pyruvate dehydrogenase kinase; protein... 213 1e-54
pir||T51626 [pyruvate dehydrogenase (lipoamide)] kinase (EC 2.7.... 209 2e-53
gb|AAF08568.1|AC011623_1 putative pyruvate dehydrogenase kinase,... 203 9e-52
gb|AAC63961.1| pyruvate dehydrogenase kinase isoform 1; PDK1 [Ze... 196 2e-49
>gb|AAC97601.1| pyruvate dehydrogenase kinase [Arabidopsis thaliana]
gi|14334688|gb|AAK59522.1| putative pyruvate
dehydrogenase kinase [Arabidopsis thaliana]
gi|16323390|gb|AAL15189.1| putative pyruvate
dehydrogenase kinase [Arabidopsis thaliana]
Length = 366
Score = 213 bits (542), Expect = 1e-54
Identities = 104/118 (88%), Positives = 111/118 (93%), Gaps = 1/118 (0%)
Frame = -1
Query: 538 ERFIDSDNVAPPVRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDEHED 359
ERF+DSD VAPP+RIIVADG+EDVTIKVSDEGGGI RSGLP+IFTYLYSTARNPL+E D
Sbjct: 249 ERFVDSDRVAPPIRIIVADGIEDVTIKVSDEGGGIARSGLPRIFTYLYSTARNPLEEDVD 308
Query: 358 LGLGD-NVTMAGYGYGIPISRLYARYFGGDLQIISMEGYGTDAYLHLSRLGDSQEPLP 188
LG+ D VTMAGYGYG+PISRLYARYFGGDLQIISMEGYGTDAYLHLSRLGDSQEPLP
Sbjct: 309 LGIADVPVTMAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLSRLGDSQEPLP 366
>ref|NP_187300.2| putative pyruvate dehydrogenase kinase; protein id: At3g06483.1
[Arabidopsis thaliana]
Length = 369
Score = 213 bits (542), Expect = 1e-54
Identities = 104/118 (88%), Positives = 111/118 (93%), Gaps = 1/118 (0%)
Frame = -1
Query: 538 ERFIDSDNVAPPVRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDEHED 359
ERF+DSD VAPP+RIIVADG+EDVTIKVSDEGGGI RSGLP+IFTYLYSTARNPL+E D
Sbjct: 252 ERFVDSDRVAPPIRIIVADGIEDVTIKVSDEGGGIARSGLPRIFTYLYSTARNPLEEDVD 311
Query: 358 LGLGD-NVTMAGYGYGIPISRLYARYFGGDLQIISMEGYGTDAYLHLSRLGDSQEPLP 188
LG+ D VTMAGYGYG+PISRLYARYFGGDLQIISMEGYGTDAYLHLSRLGDSQEPLP
Sbjct: 312 LGIADVPVTMAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLSRLGDSQEPLP 369
>pir||T51626 [pyruvate dehydrogenase (lipoamide)] kinase (EC 2.7.1.99)
[validated] - Arabidopsis thaliana
gi|3641834|emb|CAA07447.1| pyruvate dehydrogenase kinase
[Arabidopsis thaliana]
Length = 366
Score = 209 bits (531), Expect = 2e-53
Identities = 102/118 (86%), Positives = 109/118 (91%), Gaps = 1/118 (0%)
Frame = -1
Query: 538 ERFIDSDNVAPPVRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDEHED 359
ERF+DSD VAPP+RIIVADG+EDVTIKVSDEGGGI RSGLP+IFTYLYSTARNPL+E D
Sbjct: 249 ERFVDSDRVAPPIRIIVADGIEDVTIKVSDEGGGIARSGLPRIFTYLYSTARNPLEEDVD 308
Query: 358 LGLGD-NVTMAGYGYGIPISRLYARYFGGDLQIISMEGYGTDAYLHLSRLGDSQEPLP 188
LG+ D TM GYGYG+PISRLYARYFGGDLQIISMEGYGTDAYLHLSRLGDSQEPLP
Sbjct: 309 LGIADVPGTMGGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLSRLGDSQEPLP 366
>gb|AAF08568.1|AC011623_1 putative pyruvate dehydrogenase kinase, 5' partial [Arabidopsis
thaliana]
Length = 297
Score = 203 bits (517), Expect = 9e-52
Identities = 104/132 (78%), Positives = 111/132 (83%), Gaps = 15/132 (11%)
Frame = -1
Query: 538 ERFIDSDNVAPPVRIIVADGLEDVTIK--------------VSDEGGGIPRSGLPKIFTY 401
ERF+DSD VAPP+RIIVADG+EDVTIK VSDEGGGI RSGLP+IFTY
Sbjct: 166 ERFVDSDRVAPPIRIIVADGIEDVTIKPFRSLLHRFDPIIVVSDEGGGIARSGLPRIFTY 225
Query: 400 LYSTARNPLDEHEDLGLGD-NVTMAGYGYGIPISRLYARYFGGDLQIISMEGYGTDAYLH 224
LYSTARNPL+E DLG+ D VTMAGYGYG+PISRLYARYFGGDLQIISMEGYGTDAYLH
Sbjct: 226 LYSTARNPLEEDVDLGIADVPVTMAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLH 285
Query: 223 LSRLGDSQEPLP 188
LSRLGDSQEPLP
Sbjct: 286 LSRLGDSQEPLP 297
>gb|AAC63961.1| pyruvate dehydrogenase kinase isoform 1; PDK1 [Zea mays]
Length = 363
Score = 196 bits (497), Expect = 2e-49
Identities = 97/117 (82%), Positives = 104/117 (87%)
Frame = -1
Query: 538 ERFIDSDNVAPPVRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDEHED 359
ER++DSD +APPVRIIVADG EDVTIK+SDEGGGIPRSGL +IFTYLYSTA NP D
Sbjct: 250 ERYMDSDKLAPPVRIIVADGAEDVTIKISDEGGGIPRSGLSRIFTYLYSTAENPPDLD-- 307
Query: 358 LGLGDNVTMAGYGYGIPISRLYARYFGGDLQIISMEGYGTDAYLHLSRLGDSQEPLP 188
G + VTMAGYGYGIPISRLYARYFGGDLQIISMEGYGTDAYLHLSRLGDS+EPLP
Sbjct: 308 -GHNEGVTMAGYGYGIPISRLYARYFGGDLQIISMEGYGTDAYLHLSRLGDSEEPLP 363
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 484,013,207
Number of Sequences: 1393205
Number of extensions: 11554420
Number of successful extensions: 26657
Number of sequences better than 10.0: 548
Number of HSP's better than 10.0 without gapping: 25623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26480
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18173652336
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
