Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001987A_C01 KMC001987A_c01
(606 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL87667.1| transcription factor RAU1 [Oryza sativa] 113 2e-24
ref|NP_564583.1| expressed protein; protein id: At1g51140.1, sup... 108 5e-23
ref|NP_181757.1| bHLH protein; protein id: At2g42280.1 [Arabidop... 107 2e-22
gb|AAF04760.1|AF103808_1 helix-loop-helix protein 1A [Pinus taeda] 101 7e-21
emb|CAD41125.1| OSJNBa0084K20.5 [Oryza sativa (japonica cultivar... 99 3e-20
>gb|AAL87667.1| transcription factor RAU1 [Oryza sativa]
Length = 150
Score = 113 bits (283), Expect = 2e-24
Identities = 57/79 (72%), Positives = 67/79 (84%), Gaps = 2/79 (2%)
Frame = -2
Query: 605 IRAQRGFATHPRSLAERVRRTKISERMRKLPDLVPNMDQPTNPADMLDLAVDYIQDLPKP 426
IRA+RG ATHPRS+AERVRRT+ISER+RKL +LVPNMD+ TN ADMLDLAVDYI+DL K
Sbjct: 69 IRAKRGCATHPRSIAERVRRTRISERIRKLQELVPNMDKQTNTADMLDLAVDYIKDLQKQ 128
Query: 425 AQTLSDCQAKCTCS--HQQ 375
+ L+D +A CTCS HQQ
Sbjct: 129 VKGLNDSRANCTCSAKHQQ 147
>ref|NP_564583.1| expressed protein; protein id: At1g51140.1, supported by cDNA:
gi_14334499, supported by cDNA: gi_17104810 [Arabidopsis
thaliana] gi|25405437|pir||H96548 unknown protein
[imported] - Arabidopsis thaliana
gi|12320788|gb|AAG50543.1|AC079828_14 unknown protein
[Arabidopsis thaliana] gi|14334500|gb|AAK59447.1|
unknown protein [Arabidopsis thaliana]
gi|17104811|gb|AAL34294.1| unknown protein [Arabidopsis
thaliana]
Length = 379
Score = 108 bits (270), Expect = 5e-23
Identities = 53/74 (71%), Positives = 61/74 (81%)
Frame = -2
Query: 605 IRAQRGFATHPRSLAERVRRTKISERMRKLPDLVPNMDQPTNPADMLDLAVDYIQDLPKP 426
IRA+RG ATHPRS+AERVRRTKISERMRKL DLVPNMD TN ADMLDLAV YI+DL +
Sbjct: 304 IRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDTQTNTADMLDLAVQYIKDLQEQ 363
Query: 425 AQTLSDCQAKCTCS 384
+ L + +A+C CS
Sbjct: 364 VKALEESRARCRCS 377
>ref|NP_181757.1| bHLH protein; protein id: At2g42280.1 [Arabidopsis thaliana]
gi|7487413|pir||T00937 hypothetical protein At2g42280
[imported] - Arabidopsis thaliana
gi|2673918|gb|AAB88652.1| unknown protein [Arabidopsis
thaliana]
Length = 380
Score = 107 bits (266), Expect = 2e-22
Identities = 51/77 (66%), Positives = 65/77 (84%)
Frame = -2
Query: 605 IRAQRGFATHPRSLAERVRRTKISERMRKLPDLVPNMDQPTNPADMLDLAVDYIQDLPKP 426
IRA+RG ATHPRS+AERVRRT+ISERMRKL +LVPNMD+ TN +DMLDLAVDYI+DL +
Sbjct: 300 IRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTSDMLDLAVDYIKDLQRQ 359
Query: 425 AQTLSDCQAKCTCSHQQ 375
+ L+D +A C C +++
Sbjct: 360 YKILNDNRANCKCMNKE 376
>gb|AAF04760.1|AF103808_1 helix-loop-helix protein 1A [Pinus taeda]
Length = 551
Score = 101 bits (252), Expect = 7e-21
Identities = 50/76 (65%), Positives = 63/76 (82%), Gaps = 1/76 (1%)
Frame = -2
Query: 605 IRAQRGFATHPRSLAERVRRTKISERMRKLPDLVPNMDQPT-NPADMLDLAVDYIQDLPK 429
+RA+RG ATHPRS+AERVRRT+ISERMRKL +LVPN D+ T N ADMLD AV+Y++ L K
Sbjct: 468 VRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNSDKQTVNIADMLDEAVEYVKSLQK 527
Query: 428 PAQTLSDCQAKCTCSH 381
Q L++ +AKCTC+H
Sbjct: 528 QVQELAENRAKCTCTH 543
>emb|CAD41125.1| OSJNBa0084K20.5 [Oryza sativa (japonica cultivar-group)]
Length = 218
Score = 99.4 bits (246), Expect = 3e-20
Identities = 48/77 (62%), Positives = 62/77 (80%)
Frame = -2
Query: 605 IRAQRGFATHPRSLAERVRRTKISERMRKLPDLVPNMDQPTNPADMLDLAVDYIQDLPKP 426
+RA+RG ATHPRS+AER RRT+ISE++RKL LVPNMD+ T+ +DMLDLAVD+I+ L
Sbjct: 134 VRAKRGCATHPRSIAERERRTRISEKLRKLQALVPNMDKQTSTSDMLDLAVDHIKGLQSQ 193
Query: 425 AQTLSDCQAKCTCSHQQ 375
QTL + + KCTCS +Q
Sbjct: 194 LQTLKEDKEKCTCSCKQ 210
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 553,561,156
Number of Sequences: 1393205
Number of extensions: 12515469
Number of successful extensions: 31248
Number of sequences better than 10.0: 176
Number of HSP's better than 10.0 without gapping: 30221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31185
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23997478008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
