Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001986A_C01 KMC001986A_c01
(643 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_187168.1| unknown protein; protein id: At3g05170.1 [Arabi... 102 4e-21
ref|NP_172369.1| unknown protein; protein id: At1g08940.1 [Arabi... 79 4e-14
dbj|BAA85437.1| Similar to Sequence of BAC F7G19 from Arabidopsi... 62 5e-09
gb|AAM22016.1|AC093178_11 Hypothetical protein [Oryza sativa (ja... 44 0.002
pir||A45243 envelope protein HrpH - Pseudomonas syringae 39 0.077
>ref|NP_187168.1| unknown protein; protein id: At3g05170.1 [Arabidopsis thaliana]
gi|6729027|gb|AAF27023.1|AC009177_13 unknown protein
[Arabidopsis thaliana]
Length = 316
Score = 102 bits (254), Expect = 4e-21
Identities = 46/82 (56%), Positives = 56/82 (68%)
Frame = -3
Query: 638 LNHFGNGEFRVMHLGSGGEYSFAVHHTDREMHEWGLSPDMIADQKWRAHATKGAWHDQGP 459
LN+ GN E RVM LG GG+YS A+HHT+ E+ WGLSP+MIADQKWRA+A KG W +
Sbjct: 201 LNNPGNSEIRVMELGQGGDYSLAIHHTEEELATWGLSPEMIADQKWRANAHKGEWKEDCK 260
Query: 458 LSLDTFFDHLHDSDNEDNDDQT 393
FFDH+ DSD E + T
Sbjct: 261 WYFGDFFDHMADSDKECETEAT 282
>ref|NP_172369.1| unknown protein; protein id: At1g08940.1 [Arabidopsis thaliana]
gi|25407069|pir||C86221 hypothetical protein [imported]
- Arabidopsis thaliana gi|2342686|gb|AAB70412.1| Similar
to Saccharomyces hypothetical protein YDR051c
(gb|Z49209). ESTs gb|T44436,gb|42252 come from this
gene. [Arabidopsis thaliana]
Length = 281
Score = 79.3 bits (194), Expect = 4e-14
Identities = 39/78 (50%), Positives = 54/78 (69%), Gaps = 1/78 (1%)
Frame = -3
Query: 638 LNHFGNGEFRVMHLGSGGEYSFAVHHTDREMHEWGLSPDMIADQKWRAHATK-GAWHDQG 462
LN+FGN EFRVM LG+ GEY+FA+HH++ EM +WG+S DMI DQK R + +D
Sbjct: 204 LNNFGNCEFRVMELGASGEYTFAIHHSEEEMLDWGMSKDMIDDQKDRVDGCRVTTSNDSC 263
Query: 461 PLSLDTFFDHLHDSDNED 408
L L+ +FD L +D+E+
Sbjct: 264 SLHLNEYFDLLDVTDDEE 281
>dbj|BAA85437.1| Similar to Sequence of BAC F7G19 from Arabidopsis thaliana
chromosome 1; similar to Saccharomyces hypothetical
protein YDR051c (AC000106) [Oryza sativa (japonica
cultivar-group)] gi|25553532|dbj|BAC24808.1|
OSJNBa0004I20.3 [Oryza sativa (japonica cultivar-group)]
Length = 450
Score = 62.4 bits (150), Expect = 5e-09
Identities = 35/86 (40%), Positives = 43/86 (49%), Gaps = 4/86 (4%)
Frame = -3
Query: 638 LNHFGNGEFRVMHLGSGGEYSFAVHHTDREMHEWGLSPDMIADQKWRAHATKGAWH---- 471
L + NG VM G+GG YS VHH+ E+ E+GL+ DMI DQKW+ A G +
Sbjct: 357 LANLSNGGALVMQTGAGGRYSLLVHHSVDELREFGLTDDMIEDQKWQMTARPGELNYNFI 416
Query: 470 DQGPLSLDTFFDHLHDSDNEDNDDQT 393
GP F H HD DD T
Sbjct: 417 TNGPSFFTHFTHHHHDKHKAAIDDGT 442
>gb|AAM22016.1|AC093178_11 Hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 188
Score = 43.5 bits (101), Expect = 0.002
Identities = 20/46 (43%), Positives = 28/46 (60%)
Frame = -3
Query: 638 LNHFGNGEFRVMHLGSGGEYSFAVHHTDREMHEWGLSPDMIADQKW 501
L + N VM G+GG YS VHH+ E+ +GL+ DMI DQ++
Sbjct: 129 LANLSNDGALVMQTGAGGRYSLLVHHSVEELRVFGLTDDMIEDQRF 174
>pir||A45243 envelope protein HrpH - Pseudomonas syringae
Length = 748
Score = 38.5 bits (88), Expect = 0.077
Identities = 18/31 (58%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = +2
Query: 398 GHHCPHYQSHEDDQKKYR--GTRGPDHARHP 484
GHHC QSHED Q+ R G R PD RHP
Sbjct: 692 GHHCSGGQSHEDQQRCSRVGGVRYPDRVRHP 722
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 543,931,765
Number of Sequences: 1393205
Number of extensions: 11352479
Number of successful extensions: 28211
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 26661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28138
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27007650415
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
