Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001985A_C01 KMC001985A_c01
(581 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_656819.1| Reo_sigma1, Reovirus viral attachment protein s... 32 5.8
gb|EAA07404.1| agCP10151 [Anopheles gambiae str. PEST] 32 7.6
gb|EAA15377.1| ERYTHROCYTE MEMBRANE PROTEIN PFEMP3 [Plasmodium y... 31 9.9
ref|NP_502040.1| Protein kinase with SH2 domain(s) family member... 31 9.9
ref|NP_073757.1| NADH dehydrogenase subunit 6 [Heterodoxus macro... 31 9.9
>ref|NP_656819.1| Reo_sigma1, Reovirus viral attachment protein sigma 1 [Bacillus
anthracis A2012]
Length = 807
Score = 32.0 bits (71), Expect = 5.8
Identities = 19/63 (30%), Positives = 36/63 (56%)
Frame = -3
Query: 546 LDSFSVANINLAAIGTFLSRESNGANSHRVLEGVVEFEPGVSKRVSGNENLAIISKGSSS 367
+D + A ++A+GT L++ SNG N +G + E G++ S NEN++++S +S
Sbjct: 518 IDGTNEAKNGVSALGTALNQLSNGINDG--AKGAQQIERGLT---SVNENISVLSNATSQ 572
Query: 366 FRS 358
+
Sbjct: 573 LHA 575
>gb|EAA07404.1| agCP10151 [Anopheles gambiae str. PEST]
Length = 789
Score = 31.6 bits (70), Expect = 7.6
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = +2
Query: 359 DLKEELPFDIIARFSFPLTLFETPGSNSTTPSSTLCELAPLDS 487
++K +L D+ A T+ ETPG ST P+S L + L+S
Sbjct: 300 EIKAKLHLDVSATPQLSSTMNETPGHGSTYPASMLTNVESLES 342
>gb|EAA15377.1| ERYTHROCYTE MEMBRANE PROTEIN PFEMP3 [Plasmodium yoelii yoelii]
Length = 1137
Score = 31.2 bits (69), Expect = 9.9
Identities = 24/112 (21%), Positives = 52/112 (46%), Gaps = 4/112 (3%)
Frame = -3
Query: 573 SIHPKRSVSL--DSFSVANINLAAIGTF--LSRESNGANSHRVLEGVVEFEPGVSKRVSG 406
SIH R+ + D++S +N N+ + +++ N +N++ ++ E + S
Sbjct: 782 SIHSVRNGNFKDDNYSTSNTNVTVANSISNINKSINTSNNNNNNNNILYMEEKYNHSNSC 841
Query: 405 NENLAIISKGSSSFRSMRYLRGVPSSMKRSRSYNGKYLLSWYSRSQKKQNAN 250
NEN I+ ++ +++ + V S S + KY+ + + KK + N
Sbjct: 842 NENTNYINVNNNKKKNLNKNKSVSESSSFSNNLKNKYI---FKNNIKKNSPN 890
>ref|NP_502040.1| Protein kinase with SH2 domain(s) family member [Caenorhabditis
elegans] gi|7510395|pir||T27313 hypothetical protein
Y69E1A.3 - Caenorhabditis elegans
gi|3947640|emb|CAA22261.1| Hypothetical protein Y69E1A.3
[Caenorhabditis elegans]
Length = 563
Score = 31.2 bits (69), Expect = 9.9
Identities = 21/67 (31%), Positives = 32/67 (47%)
Frame = -3
Query: 561 KRSVSLDSFSVANINLAAIGTFLSRESNGANSHRVLEGVVEFEPGVSKRVSGNENLAIIS 382
KR+ + FS+AN + A +++ S A S EPG K SGN+N++
Sbjct: 11 KRNFKIPMFSIANFAIFASFPVMNKISFQAPSDIEASDKNPNEPGADKLESGNKNVSTSM 70
Query: 381 KGSSSFR 361
+SS R
Sbjct: 71 MSNSSSR 77
>ref|NP_073757.1| NADH dehydrogenase subunit 6 [Heterodoxus macropus]
gi|12328588|gb|AAG52645.1|AF270939_1 NADH dehydrogenase
subunit 6 [Heterodoxus macropus]
Length = 195
Score = 31.2 bits (69), Expect = 9.9
Identities = 17/52 (32%), Positives = 29/52 (55%)
Frame = -1
Query: 563 LRDQFLLILFLLQISILLLLELFYQGNLMVLTHIECWRVLLNLNLVFQRGLV 408
L++ F+L FL ISIL + FY NL + + +L+ +N++ GL+
Sbjct: 3 LKNYFILFAFLTLISILSSISFFYLSNLSKIMSL----ILVLINIISVSGLI 50
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 424,984,190
Number of Sequences: 1393205
Number of extensions: 8252182
Number of successful extensions: 19695
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 18723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19671
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21712003912
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
