Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001983A_C01 KMC001983A_c01
(777 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK00447.1|AC060755_17 unknown protein [Oryza sativa] 64 2e-09
gb|AAF25968.1|AC017118_5 F6N18.8 [Arabidopsis thaliana] 62 9e-09
ref|NP_564406.1| expressed protein; protein id: At1g32700.1, sup... 62 9e-09
gb|AAM63219.1| unknown [Arabidopsis thaliana] 62 9e-09
pir||A96794 unknown protein F14G6.19 [imported] - Arabidopsis th... 45 0.002
>gb|AAK00447.1|AC060755_17 unknown protein [Oryza sativa]
Length = 254
Score = 64.3 bits (155), Expect = 2e-09
Identities = 42/104 (40%), Positives = 53/104 (50%)
Frame = -1
Query: 777 EVCERSLLDSFRFCSLGCRLDGTSKNFPEAEEITSHGGHGFRLRGLHTAAVRSYGGAEEH 598
EVC RSLLD+FRFCSLGC++ G S + A T+ R R H A+ S ++
Sbjct: 156 EVCSRSLLDNFRFCSLGCKVVGCSPHAATA-AATATATAARRKRLRHAHAMASTSDSDNS 214
Query: 597 QGAELHSFHAATHFTTHLRLITERPTRRKGIPHPAPMGGLALQY 466
SF +T T P RRKGIPH AP G L ++Y
Sbjct: 215 TSPAKRSFTPSTPPPPP----TLPPKRRKGIPHRAPFGSLIVEY 254
>gb|AAF25968.1|AC017118_5 F6N18.8 [Arabidopsis thaliana]
Length = 270
Score = 62.0 bits (149), Expect = 9e-09
Identities = 42/105 (40%), Positives = 58/105 (55%), Gaps = 1/105 (0%)
Frame = -1
Query: 777 EVCERSLLDSFRFCSLGCRLDGTSKNFPEAEEITSHGGHGFRLRGLHTAAVRSYGGAEEH 598
EVC RSL+DSFRFCSLGC++ G SK + +E T++ + + S G +++
Sbjct: 176 EVCYRSLVDSFRFCSLGCKISGISKK--KRKEWTNNLSDSD-----DSYSSTSIGRLKKN 228
Query: 597 QGAELHSFHAATHFTTHLRLITER-PTRRKGIPHPAPMGGLALQY 466
+SF T T L + R RRKGIPH AP GGL ++Y
Sbjct: 229 DDIMNNSF---TPSTPPLSAVNRRIAKRRKGIPHRAPFGGLIIEY 270
>ref|NP_564406.1| expressed protein; protein id: At1g32700.1, supported by cDNA:
206224. [Arabidopsis thaliana]
Length = 213
Score = 62.0 bits (149), Expect = 9e-09
Identities = 42/105 (40%), Positives = 58/105 (55%), Gaps = 1/105 (0%)
Frame = -1
Query: 777 EVCERSLLDSFRFCSLGCRLDGTSKNFPEAEEITSHGGHGFRLRGLHTAAVRSYGGAEEH 598
EVC RSL+DSFRFCSLGC++ G SK + +E T++ + + S G +++
Sbjct: 119 EVCYRSLVDSFRFCSLGCKISGISKK--KRKEWTNNLSDSD-----DSYSSTSIGRLKKN 171
Query: 597 QGAELHSFHAATHFTTHLRLITER-PTRRKGIPHPAPMGGLALQY 466
+SF T T L + R RRKGIPH AP GGL ++Y
Sbjct: 172 DDIMNNSF---TPSTPPLSAVNRRIAKRRKGIPHRAPFGGLIIEY 213
>gb|AAM63219.1| unknown [Arabidopsis thaliana]
Length = 213
Score = 62.0 bits (149), Expect = 9e-09
Identities = 42/105 (40%), Positives = 58/105 (55%), Gaps = 1/105 (0%)
Frame = -1
Query: 777 EVCERSLLDSFRFCSLGCRLDGTSKNFPEAEEITSHGGHGFRLRGLHTAAVRSYGGAEEH 598
EVC RSL+DSFRFCSLGC++ G SK + +E T++ + + S G +++
Sbjct: 119 EVCYRSLVDSFRFCSLGCKISGISKK--KRKEWTNNLSDSD-----DSYSSTSIGRLKKN 171
Query: 597 QGAELHSFHAATHFTTHLRLITER-PTRRKGIPHPAPMGGLALQY 466
+SF T T L + R RRKGIPH AP GGL ++Y
Sbjct: 172 DDIMNNSF---TPSTPPLSAVNRRIAKRRKGIPHRAPFGGLIIEY 213
>pir||A96794 unknown protein F14G6.19 [imported] - Arabidopsis thaliana
gi|12323979|gb|AAG51950.1|AC015450_11 unknown protein;
77280-78196 [Arabidopsis thaliana]
Length = 242
Score = 44.7 bits (104), Expect = 0.002
Identities = 22/45 (48%), Positives = 28/45 (61%)
Frame = -1
Query: 777 EVCERSLLDSFRFCSLGCRLDGTSKNFPEAEEITSHGGHGFRLRG 643
E+C RSLLDSFRFCSLGC+L G ++ + + G HG G
Sbjct: 122 EICCRSLLDSFRFCSLGCKLGGMKRD--PSLTFSLRGKHGREYEG 164
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 720,762,885
Number of Sequences: 1393205
Number of extensions: 17177102
Number of successful extensions: 58483
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 52154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57882
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 38375267554
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
