KMC001982A_c01
[Fasta Sequence]
[Nr Search]
[EST assemble image]
Fasta Sequence
>KMC001982A_C01 KMC001982A_c01
aacaaggattattaATAAACAAAGCTTCTCAATCTTCATCCTATCTGTAATTTTTTTCTT
CTCAAATTCTGTTGTATCTTAACAAACAGCATGGAATGGTTACAGATCATGTACTCCCCA
CCTTGCTGGCATCTATATCAGTAGCACAATACATTTGAAGATGATACTACGAATGGGGAG
AGATGAATAAAATCAAATAGTCTGAATTTACAGGCCTCTCTCTCTAGCCTAAAATCTTAA
AATGAGGCAAAAGAGGCCAATCCAATTGTATTACAATAAAATGAGATTAATCACCATTTA
AATAGCTGGTGTGGCCAGAATATATGACTATTTTACTGCACATACCATTTTACTTCTTCA
TTCATCAATCCAAACTAACCAAGAAAGAACTTGAATATGTCACTCAATGAAACAATGCCT
TCTACACGCTTGCTGCCAGCTTCCACAATAACAAGCCGCCTCACACCTGGATTTGCCAAC
CGTTCCATGACTTTTTGCAGCGAATCAGAGCGTAAGCACATCTGACATCTTTGACTTCTG
AGTTCATACGGACTATATGCGTCCTGGCCCAACTGCAAAGCCTCATGAACAGTCATCTCA
TCAAGATTGATGTGAGAATATGCTCTGTCCTTTGCCAAAGCCGTTATGTCACTCCGACAA
TATATATCCAGTA
Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001982A_C01 KMC001982A_c01
(673 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAG10141.1|AF250335_1 putative activator subunit of SNF1-rela... 155 6e-37
ref|NP_563834.1| expressed protein; protein id: At1g09020.1, sup... 155 6e-37
gb|AAG31752.1|AF276086_1 protein kinase AKINbetagamma-2 [Zea mays] 147 1e-34
gb|AAG31751.1|AF276085_1 protein kinase AKINbetagamma-1 [Zea mays] 145 5e-34
pir||B86222 hypothetical protein [imported] - Arabidopsis thalia... 107 2e-22
>gb|AAG10141.1|AF250335_1 putative activator subunit of SNF1-related protein kinase SNF4
[Arabidopsis thaliana]
Length = 382
Score = 155 bits (391), Expect = 6e-37
Identities = 78/99 (78%), Positives = 88/99 (88%), Gaps = 1/99 (1%)
Frame = -3
Query: 671 LDIYCRSDITALAKDRAYSHINLDEMTVHEALQLGQDAYSPYEL-RSQRCQMCLRSDSLQ 495
+DIY RSDITALAKD+AY+ I+LD+MTVH+ALQLGQDA PY + QRC MCLRSDSL
Sbjct: 283 IDIYSRSDITALAKDKAYAQIHLDDMTVHQALQLGQDASPPYGIFNGQRCHMCLRSDSLV 342
Query: 494 KVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFFLG 378
KVMERLANPGVRRLVIVEAGSKRVEGI+SLSD+F+F LG
Sbjct: 343 KVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFQFLLG 381
>ref|NP_563834.1| expressed protein; protein id: At1g09020.1, supported by cDNA:
gi_16612254, supported by cDNA: gi_9965728 [Arabidopsis
thaliana] gi|16612255|gb|AAL27498.1|AF439826_1
At1g09020/F7G19_11 [Arabidopsis thaliana]
gi|23308443|gb|AAN18191.1| At1g09020/F7G19_11
[Arabidopsis thaliana]
Length = 487
Score = 155 bits (391), Expect = 6e-37
Identities = 78/99 (78%), Positives = 88/99 (88%), Gaps = 1/99 (1%)
Frame = -3
Query: 671 LDIYCRSDITALAKDRAYSHINLDEMTVHEALQLGQDAYSPYEL-RSQRCQMCLRSDSLQ 495
+DIY RSDITALAKD+AY+ I+LD+MTVH+ALQLGQDA PY + QRC MCLRSDSL
Sbjct: 388 IDIYSRSDITALAKDKAYAQIHLDDMTVHQALQLGQDASPPYGIFNGQRCHMCLRSDSLV 447
Query: 494 KVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFFLG 378
KVMERLANPGVRRLVIVEAGSKRVEGI+SLSD+F+F LG
Sbjct: 448 KVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFQFLLG 486
>gb|AAG31752.1|AF276086_1 protein kinase AKINbetagamma-2 [Zea mays]
Length = 496
Score = 147 bits (371), Expect = 1e-34
Identities = 74/98 (75%), Positives = 83/98 (84%), Gaps = 1/98 (1%)
Frame = -3
Query: 671 LDIYCRSDITALAKDRAYSHINLDEMTVHEALQLGQDAYSPYEL-RSQRCQMCLRSDSLQ 495
LD Y RSDITALAK + Y+H+ LDEMT+H+ALQLGQDA +P+ QRCQMCLRSD L
Sbjct: 397 LDTYSRSDITALAKAKVYTHVRLDEMTIHQALQLGQDANTPFGFFNGQRCQMCLRSDPLL 456
Query: 494 KVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFFL 381
KVMERLANPGVRR+ IVEAGSKRVEGI+SLSDIFKF L
Sbjct: 457 KVMERLANPGVRRVFIVEAGSKRVEGIISLSDIFKFLL 494
>gb|AAG31751.1|AF276085_1 protein kinase AKINbetagamma-1 [Zea mays]
Length = 497
Score = 145 bits (366), Expect = 5e-34
Identities = 73/98 (74%), Positives = 82/98 (83%), Gaps = 1/98 (1%)
Frame = -3
Query: 671 LDIYCRSDITALAKDRAYSHINLDEMTVHEALQLGQDAYSPYEL-RSQRCQMCLRSDSLQ 495
LD Y RSDITALAK + Y+H+ LDEM +H+ALQLGQDA +P+ QRCQMCLRSD L
Sbjct: 398 LDTYSRSDITALAKAKVYTHVRLDEMAIHQALQLGQDANTPFGFFNGQRCQMCLRSDPLL 457
Query: 494 KVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFFL 381
KVMERLANPGVRR+ IVEAGSKRVEGI+SLSDIFKF L
Sbjct: 458 KVMERLANPGVRRVFIVEAGSKRVEGIISLSDIFKFLL 495
>pir||B86222 hypothetical protein [imported] - Arabidopsis thaliana
gi|2342682|gb|AAB70406.1| Contains similarity to Rattus
AMP-activated protein kinase (gb|X95577). [Arabidopsis
thaliana]
Length = 391
Score = 107 bits (266), Expect = 2e-22
Identities = 53/70 (75%), Positives = 60/70 (85%), Gaps = 1/70 (1%)
Frame = -3
Query: 671 LDIYCRSDITALAKDRAYSHINLDEMTVHEALQLGQDAYSPYEL-RSQRCQMCLRSDSLQ 495
+DIY RSDITALAKD+AY+ I+LD+MTVH+ALQLGQDA PY + QRC MCLRSDSL
Sbjct: 317 IDIYSRSDITALAKDKAYAQIHLDDMTVHQALQLGQDASPPYGIFNGQRCHMCLRSDSLV 376
Query: 494 KVMERLANPG 465
KVMERLANPG
Sbjct: 377 KVMERLANPG 386
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 547,393,036
Number of Sequences: 1393205
Number of extensions: 11000623
Number of successful extensions: 30556
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 29765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30530
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 29421376608
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
EST assemble image
|
|
|
|
clone |
accession |
position |
1 |
MR043e12_f |
BP079337 |
1 |
528 |
2 |
GENf028f05 |
BP059544 |
15 |
474 |
3 |
MWL030b05_f |
AV769061 |
31 |
514 |
4 |
MF045e05_f |
BP030673 |
166 |
673 |
|
Lotus japonicus
Kazusa DNA Research Institute