KMC001982A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KMC001982A_C01 KMC001982A_c01
aacaaggattattaATAAACAAAGCTTCTCAATCTTCATCCTATCTGTAATTTTTTTCTT
CTCAAATTCTGTTGTATCTTAACAAACAGCATGGAATGGTTACAGATCATGTACTCCCCA
CCTTGCTGGCATCTATATCAGTAGCACAATACATTTGAAGATGATACTACGAATGGGGAG
AGATGAATAAAATCAAATAGTCTGAATTTACAGGCCTCTCTCTCTAGCCTAAAATCTTAA
AATGAGGCAAAAGAGGCCAATCCAATTGTATTACAATAAAATGAGATTAATCACCATTTA
AATAGCTGGTGTGGCCAGAATATATGACTATTTTACTGCACATACCATTTTACTTCTTCA
TTCATCAATCCAAACTAACCAAGAAAGAACTTGAATATGTCACTCAATGAAACAATGCCT
TCTACACGCTTGCTGCCAGCTTCCACAATAACAAGCCGCCTCACACCTGGATTTGCCAAC
CGTTCCATGACTTTTTGCAGCGAATCAGAGCGTAAGCACATCTGACATCTTTGACTTCTG
AGTTCATACGGACTATATGCGTCCTGGCCCAACTGCAAAGCCTCATGAACAGTCATCTCA
TCAAGATTGATGTGAGAATATGCTCTGTCCTTTGCCAAAGCCGTTATGTCACTCCGACAA
TATATATCCAGTA


Nr search

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KMC001982A_C01 KMC001982A_c01
         (673 letters)

Database: nr 
           1,393,205 sequences; 448,689,247 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAG10141.1|AF250335_1 putative activator subunit of SNF1-rela...   155  6e-37
ref|NP_563834.1| expressed protein; protein id: At1g09020.1, sup...   155  6e-37
gb|AAG31752.1|AF276086_1 protein kinase AKINbetagamma-2 [Zea mays]    147  1e-34
gb|AAG31751.1|AF276085_1 protein kinase AKINbetagamma-1 [Zea mays]    145  5e-34
pir||B86222 hypothetical protein [imported] - Arabidopsis thalia...   107  2e-22

>gb|AAG10141.1|AF250335_1 putative activator subunit of SNF1-related protein kinase SNF4
           [Arabidopsis thaliana]
          Length = 382

 Score =  155 bits (391), Expect = 6e-37
 Identities = 78/99 (78%), Positives = 88/99 (88%), Gaps = 1/99 (1%)
 Frame = -3

Query: 671 LDIYCRSDITALAKDRAYSHINLDEMTVHEALQLGQDAYSPYEL-RSQRCQMCLRSDSLQ 495
           +DIY RSDITALAKD+AY+ I+LD+MTVH+ALQLGQDA  PY +   QRC MCLRSDSL 
Sbjct: 283 IDIYSRSDITALAKDKAYAQIHLDDMTVHQALQLGQDASPPYGIFNGQRCHMCLRSDSLV 342

Query: 494 KVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFFLG 378
           KVMERLANPGVRRLVIVEAGSKRVEGI+SLSD+F+F LG
Sbjct: 343 KVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFQFLLG 381

>ref|NP_563834.1| expressed protein; protein id: At1g09020.1, supported by cDNA:
           gi_16612254, supported by cDNA: gi_9965728 [Arabidopsis
           thaliana] gi|16612255|gb|AAL27498.1|AF439826_1
           At1g09020/F7G19_11 [Arabidopsis thaliana]
           gi|23308443|gb|AAN18191.1| At1g09020/F7G19_11
           [Arabidopsis thaliana]
          Length = 487

 Score =  155 bits (391), Expect = 6e-37
 Identities = 78/99 (78%), Positives = 88/99 (88%), Gaps = 1/99 (1%)
 Frame = -3

Query: 671 LDIYCRSDITALAKDRAYSHINLDEMTVHEALQLGQDAYSPYEL-RSQRCQMCLRSDSLQ 495
           +DIY RSDITALAKD+AY+ I+LD+MTVH+ALQLGQDA  PY +   QRC MCLRSDSL 
Sbjct: 388 IDIYSRSDITALAKDKAYAQIHLDDMTVHQALQLGQDASPPYGIFNGQRCHMCLRSDSLV 447

Query: 494 KVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFFLG 378
           KVMERLANPGVRRLVIVEAGSKRVEGI+SLSD+F+F LG
Sbjct: 448 KVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFQFLLG 486

>gb|AAG31752.1|AF276086_1 protein kinase AKINbetagamma-2 [Zea mays]
          Length = 496

 Score =  147 bits (371), Expect = 1e-34
 Identities = 74/98 (75%), Positives = 83/98 (84%), Gaps = 1/98 (1%)
 Frame = -3

Query: 671 LDIYCRSDITALAKDRAYSHINLDEMTVHEALQLGQDAYSPYEL-RSQRCQMCLRSDSLQ 495
           LD Y RSDITALAK + Y+H+ LDEMT+H+ALQLGQDA +P+     QRCQMCLRSD L 
Sbjct: 397 LDTYSRSDITALAKAKVYTHVRLDEMTIHQALQLGQDANTPFGFFNGQRCQMCLRSDPLL 456

Query: 494 KVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFFL 381
           KVMERLANPGVRR+ IVEAGSKRVEGI+SLSDIFKF L
Sbjct: 457 KVMERLANPGVRRVFIVEAGSKRVEGIISLSDIFKFLL 494

>gb|AAG31751.1|AF276085_1 protein kinase AKINbetagamma-1 [Zea mays]
          Length = 497

 Score =  145 bits (366), Expect = 5e-34
 Identities = 73/98 (74%), Positives = 82/98 (83%), Gaps = 1/98 (1%)
 Frame = -3

Query: 671 LDIYCRSDITALAKDRAYSHINLDEMTVHEALQLGQDAYSPYEL-RSQRCQMCLRSDSLQ 495
           LD Y RSDITALAK + Y+H+ LDEM +H+ALQLGQDA +P+     QRCQMCLRSD L 
Sbjct: 398 LDTYSRSDITALAKAKVYTHVRLDEMAIHQALQLGQDANTPFGFFNGQRCQMCLRSDPLL 457

Query: 494 KVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFFL 381
           KVMERLANPGVRR+ IVEAGSKRVEGI+SLSDIFKF L
Sbjct: 458 KVMERLANPGVRRVFIVEAGSKRVEGIISLSDIFKFLL 495

>pir||B86222 hypothetical protein [imported] - Arabidopsis thaliana
           gi|2342682|gb|AAB70406.1| Contains similarity to Rattus
           AMP-activated protein kinase (gb|X95577). [Arabidopsis
           thaliana]
          Length = 391

 Score =  107 bits (266), Expect = 2e-22
 Identities = 53/70 (75%), Positives = 60/70 (85%), Gaps = 1/70 (1%)
 Frame = -3

Query: 671 LDIYCRSDITALAKDRAYSHINLDEMTVHEALQLGQDAYSPYEL-RSQRCQMCLRSDSLQ 495
           +DIY RSDITALAKD+AY+ I+LD+MTVH+ALQLGQDA  PY +   QRC MCLRSDSL 
Sbjct: 317 IDIYSRSDITALAKDKAYAQIHLDDMTVHQALQLGQDASPPYGIFNGQRCHMCLRSDSLV 376

Query: 494 KVMERLANPG 465
           KVMERLANPG
Sbjct: 377 KVMERLANPG 386

  Database: nr
    Posted date:  Apr 1, 2003  2:05 AM
  Number of letters in database: 448,689,247
  Number of sequences in database:  1,393,205
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 547,393,036
Number of Sequences: 1393205
Number of extensions: 11000623
Number of successful extensions: 30556
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 29765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30530
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 29421376608
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)


EST assemble image


clone accession position
1 MR043e12_f BP079337 1 528
2 GENf028f05 BP059544 15 474
3 MWL030b05_f AV769061 31 514
4 MF045e05_f BP030673 166 673




Lotus japonicus
Kazusa DNA Research Institute