Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001979A_C01 KMC001979A_c01
(662 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF21205.1|AC013483_29 unknown protein [Arabidopsis thaliana] 142 4e-33
ref|NP_566326.1| expressed protein; protein id: At3g07950.1, sup... 142 4e-33
dbj|BAC20791.1| hypothetical protein~similar to Arabidopsis thal... 120 2e-26
emb|CAD39335.1| OSJNBa0094O15.3 [Oryza sativa (japonica cultivar... 83 4e-15
gb|AAB67308.1| PL6 protein, unknown function but deleted in smal... 59 8e-08
>gb|AAF21205.1|AC013483_29 unknown protein [Arabidopsis thaliana]
Length = 384
Score = 142 bits (358), Expect = 4e-33
Identities = 71/100 (71%), Positives = 79/100 (79%)
Frame = -2
Query: 661 KHRGDPSEDFAFSSFFPELLRPFIDPIASIFHRMLCGRSDASNDGQDYSLGSEPLPGSDS 482
K RGDPS+DFAFS+FFPELLRP IDPIA IFHRMLCGRS+A+++ DYS PLPGSDS
Sbjct: 285 KLRGDPSDDFAFSTFFPELLRPVIDPIALIFHRMLCGRSNATSEDHDYSTSGAPLPGSDS 344
Query: 481 VEASRRRERGARALEERLAAERLGAARTAGESHTDTAENV 362
EASRRRERGARALEERL ERL AR E +D +NV
Sbjct: 345 AEASRRRERGARALEERLGTERLVPARNKDELQSDGLDNV 384
>ref|NP_566326.1| expressed protein; protein id: At3g07950.1, supported by cDNA:
13017. [Arabidopsis thaliana] gi|21537325|gb|AAM61666.1|
unknown [Arabidopsis thaliana]
gi|25083369|gb|AAN72066.1| expressed protein
[Arabidopsis thaliana]
Length = 304
Score = 142 bits (358), Expect = 4e-33
Identities = 71/100 (71%), Positives = 79/100 (79%)
Frame = -2
Query: 661 KHRGDPSEDFAFSSFFPELLRPFIDPIASIFHRMLCGRSDASNDGQDYSLGSEPLPGSDS 482
K RGDPS+DFAFS+FFPELLRP IDPIA IFHRMLCGRS+A+++ DYS PLPGSDS
Sbjct: 205 KLRGDPSDDFAFSTFFPELLRPVIDPIALIFHRMLCGRSNATSEDHDYSTSGAPLPGSDS 264
Query: 481 VEASRRRERGARALEERLAAERLGAARTAGESHTDTAENV 362
EASRRRERGARALEERL ERL AR E +D +NV
Sbjct: 265 AEASRRRERGARALEERLGTERLVPARNKDELQSDGLDNV 304
>dbj|BAC20791.1| hypothetical protein~similar to Arabidopsis thaliana chromosome 3,
F17A17.29 [Oryza sativa (japonica cultivar-group)]
Length = 302
Score = 120 bits (300), Expect = 2e-26
Identities = 59/98 (60%), Positives = 79/98 (80%)
Frame = -2
Query: 655 RGDPSEDFAFSSFFPELLRPFIDPIASIFHRMLCGRSDASNDGQDYSLGSEPLPGSDSVE 476
+GDPSE+F+FSSFFPE LRP +DPIASIFHR+LCGRS+ + D + +L + PLPGSDS+E
Sbjct: 207 KGDPSEEFSFSSFFPEFLRPVLDPIASIFHRLLCGRSERA-DARGQTLDTTPLPGSDSIE 265
Query: 475 ASRRRERGARALEERLAAERLGAARTAGESHTDTAENV 362
A+RRRERG RALE+RL AE+L A +++ + D ++ V
Sbjct: 266 ANRRRERGQRALEQRL-AEKLAAVKSSEGTSQDASDKV 302
>emb|CAD39335.1| OSJNBa0094O15.3 [Oryza sativa (japonica cultivar-group)]
Length = 317
Score = 82.8 bits (203), Expect = 4e-15
Identities = 46/97 (47%), Positives = 58/97 (59%)
Frame = -2
Query: 655 RGDPSEDFAFSSFFPELLRPFIDPIASIFHRMLCGRSDASNDGQDYSLGSEPLPGSDSVE 476
+GD S+DF+F S FP+ +RP DP+A++F RMLC RS S LP SD +
Sbjct: 231 KGDSSDDFSFPSLFPDAMRPVTDPVANLFDRMLCARSRPS---------ELALPVSDPAK 281
Query: 475 ASRRRERGARALEERLAAERLGAARTAGESHTDTAEN 365
ASRRRERG R LEERLAA+ H+ TAE+
Sbjct: 282 ASRRRERGERVLEERLAADHAADTEAPALGHS-TAED 317
>gb|AAB67308.1| PL6 protein, unknown function but deleted in small cell lung cancer
[Homo sapiens]
Length = 247
Score = 58.5 bits (140), Expect = 8e-08
Identities = 30/81 (37%), Positives = 48/81 (59%), Gaps = 5/81 (6%)
Frame = -2
Query: 655 RGDPSEDFAFSSFFPELLRPFIDPIASIFHRMLCGRSDASNDGQDYSLGSE-----PLPG 491
RGD ++ FAF++FFPE+L+P + +A++ H +L + Y +G+ LPG
Sbjct: 111 RGDMADHFAFATFFPEILQPVVGLLANLVHSLLVKVKICQKTVKRYDVGAPSSITISLPG 170
Query: 490 SDSVEASRRRERGARALEERL 428
+D +A RRR+ +AL ERL
Sbjct: 171 TDPQDAERRRQLALKALNERL 191
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 542,335,369
Number of Sequences: 1393205
Number of extensions: 11333989
Number of successful extensions: 32519
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 31405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32502
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28572683052
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
