Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001978A_C01 KMC001978A_c01
(529 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_177364.1| phosphoglycerate dehydrogenase, putative; prote... 172 3e-42
dbj|BAC22335.1| putative phosphoglycerate dehydrogenase [Oryza s... 170 1e-41
dbj|BAC22329.1| putative phosphoglycerate dehydrogenase [Oryza s... 119 2e-26
ref|NP_435982.1| putative [Sinorhizobium meliloti] gi|25283882|p... 80 1e-14
ref|NP_104486.1| phosphoglycerate dehydrogenase (EC 1.1.1.95) [M... 79 3e-14
>ref|NP_177364.1| phosphoglycerate dehydrogenase, putative; protein id: At1g72190.1
[Arabidopsis thaliana] gi|25406154|pir||D96745
hypothetical protein T9N14.9 [imported] - Arabidopsis
thaliana gi|12323669|gb|AAG51802.1|AC067754_18
phosphoglycerate dehydrogenase, putative; 33424-31403
[Arabidopsis thaliana]
Length = 344
Score = 172 bits (435), Expect = 3e-42
Identities = 81/108 (75%), Positives = 96/108 (88%)
Frame = -3
Query: 527 TAGIIDDKFISSMKKGALLVNVARGGLVDYGAVVNHLKSGHLGGLGTDVAWTEPFDPDDQ 348
TA I++ +FI SMKKGALLVN+ARGGL++Y + +L+SGHLGGLG DVAW+EPFDP+D
Sbjct: 237 TAEIVNKEFICSMKKGALLVNIARGGLINYESAFQNLESGHLGGLGIDVAWSEPFDPNDP 296
Query: 347 ILKFKNVILTPHVAGVTEHSYRSMAKVVGDVVLQLHAGLPLTGIELVN 204
ILKFKNVI+TPHVAGVTE+SYRSMAK+VGD+ LQLH GLPLTGIE VN
Sbjct: 297 ILKFKNVIITPHVAGVTEYSYRSMAKIVGDLALQLHEGLPLTGIEFVN 344
>dbj|BAC22335.1| putative phosphoglycerate dehydrogenase [Oryza sativa (japonica
cultivar-group)]
Length = 360
Score = 170 bits (430), Expect = 1e-41
Identities = 78/108 (72%), Positives = 94/108 (86%)
Frame = -3
Query: 527 TAGIIDDKFISSMKKGALLVNVARGGLVDYGAVVNHLKSGHLGGLGTDVAWTEPFDPDDQ 348
T GI+D KF+S+MKKG+ LVN+ARG L+DY AV NHLKSGHLGGLG DVAWTEP+DP+D
Sbjct: 253 TVGIVDHKFLSAMKKGSYLVNIARGRLLDYDAVFNHLKSGHLGGLGIDVAWTEPYDPEDP 312
Query: 347 ILKFKNVILTPHVAGVTEHSYRSMAKVVGDVVLQLHAGLPLTGIELVN 204
ILKF NVI+TPH+AGVTE+SYR+MAKVVG V L+LH+G P+T +E VN
Sbjct: 313 ILKFSNVIITPHIAGVTEYSYRTMAKVVGGVALKLHSGEPITEVEFVN 360
>dbj|BAC22329.1| putative phosphoglycerate dehydrogenase [Oryza sativa (japonica
cultivar-group)]
Length = 316
Score = 119 bits (298), Expect = 2e-26
Identities = 55/87 (63%), Positives = 70/87 (80%)
Frame = -3
Query: 524 AGIIDDKFISSMKKGALLVNVARGGLVDYGAVVNHLKSGHLGGLGTDVAWTEPFDPDDQI 345
A I+ + S + G+ LVN+ARG ++DY AV +HLKSGHLGGLG DVAWTEP+DP+D I
Sbjct: 226 ADIVITCLLLSNETGSYLVNIARGHILDYDAVFDHLKSGHLGGLGIDVAWTEPYDPEDPI 285
Query: 344 LKFKNVILTPHVAGVTEHSYRSMAKVV 264
LKF NVI+TPH AGVTE+S+R+ AK+V
Sbjct: 286 LKFSNVIITPHTAGVTEYSFRAAAKIV 312
>ref|NP_435982.1| putative [Sinorhizobium meliloti] gi|25283882|pir||H95353 probable
[imported] - Sinorhizobium meliloti (strain 1021)
magaplasmid pSymA gi|14523857|gb|AAK65394.1| putative
[Sinorhizobium meliloti]
Length = 328
Score = 80.5 bits (197), Expect = 1e-14
Identities = 40/102 (39%), Positives = 62/102 (60%), Gaps = 1/102 (0%)
Frame = -3
Query: 527 TAGIIDDKFISSMKKGALLVNVARGGLVDYGAVVNHLKSGHLGGLGTDVAWTEPFDPDDQ 348
T G++ + I+ MK GA+LVNV+RG +VD A++ L+ G +GG DV T+P P+
Sbjct: 210 TTGLLSRERIARMKPGAILVNVSRGPVVDDAALIEALERGRIGGAALDVFSTQPLPPEHP 269
Query: 347 ILKFKNVILTPHVAGVTEHSYRSMAK-VVGDVVLQLHAGLPL 225
+ NVI+TPH+AG++E S M K + + + GLP+
Sbjct: 270 YFRQDNVIVTPHLAGISEESMMRMGKGAAAEAIRVMEGGLPV 311
>ref|NP_104486.1| phosphoglycerate dehydrogenase (EC 1.1.1.95) [Mesorhizobium loti]
gi|14023666|dbj|BAB50272.1| phosphoglycerate
dehydrogenase [Mesorhizobium loti]
Length = 330
Score = 79.0 bits (193), Expect = 3e-14
Identities = 43/102 (42%), Positives = 61/102 (59%), Gaps = 1/102 (0%)
Frame = -3
Query: 527 TAGIIDDKFISSMKKGALLVNVARGGLVDYGAVVNHLKSGHLGGLGTDVAWTEPFDPDDQ 348
T G+I + I+ MK ALL+NV+RG +VD A++ L+ G +GG DV T+P +
Sbjct: 210 TRGLISRERIARMKPNALLINVSRGPVVDDDALIEALREGRIGGAALDVFSTQPLSYNHP 269
Query: 347 ILKFKNVILTPHVAGVTEHSYRSM-AKVVGDVVLQLHAGLPL 225
F NVI+TPH+AG+TE S M VG+ +L L LP+
Sbjct: 270 YFGFDNVIITPHMAGITEESMMRMGVGAVGEALLVLAGKLPV 311
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 437,626,023
Number of Sequences: 1393205
Number of extensions: 8706896
Number of successful extensions: 18942
Number of sequences better than 10.0: 704
Number of HSP's better than 10.0 without gapping: 18323
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18692
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17308240320
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
