Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001977A_C01 KMC001977A_c01
(471 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|O65781|GAE2_CYATE UDP-glucose 4-epimerase GEPI48 (Galactowald... 106 1e-22
gb|AAF19668.1|AC009519_2 F1N19.2 [Arabidopsis thaliana] 88 4e-17
ref|NP_176625.1| UDP-galactose 4-epimerase, putative; protein id... 88 4e-17
dbj|BAC02925.1| UDP-glucose 4-epimerase [Oryza sativa (japonica ... 87 7e-17
gb|AAM61178.1| UDPglucose 4-epimerase-like protein [Arabidopsis ... 87 1e-16
>sp|O65781|GAE2_CYATE UDP-glucose 4-epimerase GEPI48 (Galactowaldenase) (UDP-galactose
4-epimerase) gi|7437270|pir||T10498 UDPglucose
4-epimerase (EC 5.1.3.2) (clone GEPI48) - guar
gi|3021357|emb|CAA06339.1| UDP-galactose 4-epimerase
[Cyamopsis tetragonoloba]
Length = 350
Score = 106 bits (264), Expect = 1e-22
Identities = 46/48 (95%), Positives = 47/48 (97%)
Frame = -1
Query: 471 EIVYASTEKAERELNWKAKYGIDEMCRDQWNWASKNPYGYGGSEDSSN 328
E+VYAST KAERELNWKAKYGIDEMCRDQWNWASKNPYGYGGSEDSSN
Sbjct: 303 EVVYASTNKAERELNWKAKYGIDEMCRDQWNWASKNPYGYGGSEDSSN 350
>gb|AAF19668.1|AC009519_2 F1N19.2 [Arabidopsis thaliana]
Length = 447
Score = 88.2 bits (217), Expect = 4e-17
Identities = 37/47 (78%), Positives = 42/47 (88%)
Frame = -1
Query: 471 EIVYASTEKAERELNWKAKYGIDEMCRDQWNWASKNPYGYGGSEDSS 331
E VYASTEKAERELNWKA +GI+EMCRDQWNWAS NP+GYG S +S+
Sbjct: 401 ETVYASTEKAERELNWKANFGIEEMCRDQWNWASNNPFGYGSSPNST 447
>ref|NP_176625.1| UDP-galactose 4-epimerase, putative; protein id: At1g64440.1
[Arabidopsis thaliana]
gi|12323470|gb|AAG51709.1|AC066689_8 UDP-galactose
4-epimerase, putative; 6572-4109 [Arabidopsis thaliana]
Length = 348
Score = 88.2 bits (217), Expect = 4e-17
Identities = 37/47 (78%), Positives = 42/47 (88%)
Frame = -1
Query: 471 EIVYASTEKAERELNWKAKYGIDEMCRDQWNWASKNPYGYGGSEDSS 331
E VYASTEKAERELNWKA +GI+EMCRDQWNWAS NP+GYG S +S+
Sbjct: 302 ETVYASTEKAERELNWKANFGIEEMCRDQWNWASNNPFGYGSSPNST 348
>dbj|BAC02925.1| UDP-glucose 4-epimerase [Oryza sativa (japonica cultivar-group)]
Length = 354
Score = 87.4 bits (215), Expect = 7e-17
Identities = 39/48 (81%), Positives = 42/48 (87%)
Frame = -1
Query: 471 EIVYASTEKAERELNWKAKYGIDEMCRDQWNWASKNPYGYGGSEDSSN 328
EIVYA T KAE+EL WKAKYG++EMCRD WNWASKNPYGY GS DSSN
Sbjct: 308 EIVYAQTAKAEKELKWKAKYGVEEMCRDLWNWASKNPYGY-GSPDSSN 354
>gb|AAM61178.1| UDPglucose 4-epimerase-like protein [Arabidopsis thaliana]
Length = 350
Score = 86.7 bits (213), Expect = 1e-16
Identities = 37/48 (77%), Positives = 41/48 (85%)
Frame = -1
Query: 471 EIVYASTEKAERELNWKAKYGIDEMCRDQWNWASKNPYGYGGSEDSSN 328
E+VYASTEKAERELNWKAK GI+EMCRD WNWAS NPYGY S + S+
Sbjct: 302 EVVYASTEKAERELNWKAKNGIEEMCRDLWNWASNNPYGYNSSSNGSS 349
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 345,092,840
Number of Sequences: 1393205
Number of extensions: 6452613
Number of successful extensions: 11337
Number of sequences better than 10.0: 187
Number of HSP's better than 10.0 without gapping: 11117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11313
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 12524054526
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
