Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001974A_C02 KMC001974A_c02
(748 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_566696.1| unknown protein; protein id: At3g21865.1, suppo... 107 2e-22
gb|AAL36317.1| unknown protein [Arabidopsis thaliana] gi|2046587... 107 2e-22
gb|AAM67361.1| unknown [Arabidopsis thaliana] 105 5e-22
gb|EAA18108.1| hypothetical protein [Plasmodium yoelii yoelii] 48 1e-04
ref|NP_701343.1| hypothetical protein [Plasmodium falciparum 3D7... 45 0.001
>ref|NP_566696.1| unknown protein; protein id: At3g21865.1, supported by cDNA:
250935., supported by cDNA: gi_20465874 [Arabidopsis
thaliana]
Length = 100
Score = 107 bits (266), Expect = 2e-22
Identities = 61/93 (65%), Positives = 67/93 (71%), Gaps = 4/93 (4%)
Frame = -2
Query: 747 RVLDDESEKRVLVALEETGVFTSGGLVKDKVLFCSTENGRSSFVRPLEPDWHIDTNP*NC 568
RVLDDESE +VL ALE GVFTSGGLVKDKVLFCSTE GR+SFVR LEPDWHIDTNP
Sbjct: 3 RVLDDESEAKVLQALENAGVFTSGGLVKDKVLFCSTEIGRTSFVRQLEPDWHIDTNP--- 59
Query: 567 LSVSPGLSSINSMYPPH----KSERTAGNVFSA 481
+S L+ Y H K ERTA NVF++
Sbjct: 60 -EISTQLARF-IKYQLHVATVKPERTAPNVFTS 90
>gb|AAL36317.1| unknown protein [Arabidopsis thaliana] gi|20465875|gb|AAM20042.1|
unknown protein [Arabidopsis thaliana]
Length = 283
Score = 107 bits (266), Expect = 2e-22
Identities = 61/93 (65%), Positives = 67/93 (71%), Gaps = 4/93 (4%)
Frame = -2
Query: 747 RVLDDESEKRVLVALEETGVFTSGGLVKDKVLFCSTENGRSSFVRPLEPDWHIDTNP*NC 568
RVLDDESE +VL ALE GVFTSGGLVKDKVLFCSTE GR+SFVR LEPDWHIDTNP
Sbjct: 186 RVLDDESEAKVLQALENAGVFTSGGLVKDKVLFCSTEIGRTSFVRQLEPDWHIDTNP--- 242
Query: 567 LSVSPGLSSINSMYPPH----KSERTAGNVFSA 481
+S L+ Y H K ERTA NVF++
Sbjct: 243 -EISTQLARF-IKYQLHVATVKPERTAPNVFTS 273
>gb|AAM67361.1| unknown [Arabidopsis thaliana]
Length = 151
Score = 105 bits (263), Expect = 5e-22
Identities = 60/93 (64%), Positives = 67/93 (71%), Gaps = 4/93 (4%)
Frame = -2
Query: 747 RVLDDESEKRVLVALEETGVFTSGGLVKDKVLFCSTENGRSSFVRPLEPDWHIDTNP*NC 568
+VLDDESE +VL ALE GVFTSGGLVKDKVLFCSTE GR+SFVR LEPDWHIDTNP
Sbjct: 54 KVLDDESEAKVLQALENAGVFTSGGLVKDKVLFCSTEIGRTSFVRQLEPDWHIDTNP--- 110
Query: 567 LSVSPGLSSINSMYPPH----KSERTAGNVFSA 481
+S L+ Y H K ERTA NVF++
Sbjct: 111 -EISTQLARF-IKYQLHVATVKPERTAPNVFTS 141
>gb|EAA18108.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 217
Score = 48.1 bits (113), Expect = 1e-04
Identities = 22/56 (39%), Positives = 37/56 (65%)
Frame = -2
Query: 747 RVLDDESEKRVLVALEETGVFTSGGLVKDKVLFCSTENGRSSFVRPLEPDWHIDTN 580
+V +D E ++ L++TG+F G L + +++FCST NGR+S +R L P H+D +
Sbjct: 113 QVSNDIQETNIINLLKKTGLFNKG-LKEHRLMFCSTSNGRASMIRQLSPLTHVDND 167
>ref|NP_701343.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23496411|gb|AAN36067.1|AE014843_31 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 217
Score = 45.1 bits (105), Expect = 0.001
Identities = 19/56 (33%), Positives = 36/56 (63%)
Frame = -2
Query: 747 RVLDDESEKRVLVALEETGVFTSGGLVKDKVLFCSTENGRSSFVRPLEPDWHIDTN 580
++ +D EK ++ ++ G+F G L + +++FC+T NGR+S +R L P H+D +
Sbjct: 113 QISNDVQEKNIIDLFKKLGLFDKG-LKEHRLMFCNTSNGRASMIRQLSPLTHVDND 167
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 645,570,598
Number of Sequences: 1393205
Number of extensions: 14436430
Number of successful extensions: 30728
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 29865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30716
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 36032594816
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
