Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001973A_C01 KMC001973A_c01
(681 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_181285.1| unknown protein; protein id: At2g37490.1 [Arabi... 54 2e-06
ref|NP_190935.1| putative protein; protein id: At3g53670.1, supp... 45 7e-04
ref|NP_784181.1| extracellular protein [Lactobacillus plantarum ... 40 0.030
gb|EAA21353.1| similar to yeast ncl1-related [Plasmodium yoelii ... 39 0.066
ref|XP_240573.1| hypothetical protein XP_240573 [Rattus norvegicus] 39 0.066
>ref|NP_181285.1| unknown protein; protein id: At2g37490.1 [Arabidopsis thaliana]
gi|25364090|pir||D84793 hypothetical protein At2g37490
[imported] - Arabidopsis thaliana
gi|4056499|gb|AAC98065.1| unknown protein [Arabidopsis
thaliana]
Length = 194
Score = 53.9 bits (128), Expect = 2e-06
Identities = 32/58 (55%), Positives = 39/58 (67%), Gaps = 3/58 (5%)
Frame = -3
Query: 679 HTV-KNKKQQKSRKKKKYEKKNGKKGQKG--NSSSHGGSGKDKKQARKQGGHSDLSFE 515
HTV ++KKQQ+ K K +K GKKGQK NSSS GGS KDKKQA ++ HS F+
Sbjct: 127 HTVTRSKKQQQKSKSKDNHRKTGKKGQKSKDNSSSRGGSSKDKKQASRK--HSRDKFD 182
>ref|NP_190935.1| putative protein; protein id: At3g53670.1, supported by cDNA:
gi_18377573 [Arabidopsis thaliana]
gi|11289599|pir||T45907 hypothetical protein F4P12.370 -
Arabidopsis thaliana gi|6729518|emb|CAB67674.1| putative
protein [Arabidopsis thaliana]
gi|14423470|gb|AAK62417.1|AF386972_1 putative protein
[Arabidopsis thaliana] gi|18377574|gb|AAL66953.1|
putative protein [Arabidopsis thaliana]
Length = 203
Score = 45.4 bits (106), Expect = 7e-04
Identities = 32/71 (45%), Positives = 37/71 (52%)
Frame = -3
Query: 679 HTVKNKKQQKSRKKKKYEKKNGKKGQKGNSSSHGGSGKDKKQARKQGGHSDLSFESLDSH 500
HT K+Q + K K KKNGKKGQKG+S+S S KDKKQ + S S D
Sbjct: 138 HTRSKKQQPQKSKSKDNLKKNGKKGQKGSSNSR--SSKDKKQISSRS-----SKYSRDKF 190
Query: 499 DNVTGTSELDA 467
D T S L A
Sbjct: 191 DWTTQMSVLAA 201
>ref|NP_784181.1| extracellular protein [Lactobacillus plantarum WCFS1]
gi|28270121|emb|CAD63020.1| extracellular protein
[Lactobacillus plantarum WCFS1]
Length = 595
Score = 40.0 bits (92), Expect = 0.030
Identities = 22/50 (44%), Positives = 28/50 (56%)
Frame = -3
Query: 679 HTVKNKKQQKSRKKKKYEKKNGKKGQKGNSSSHGGSGKDKKQARKQGGHS 530
H K K+ K KKK KK+GK +K +S HG S K KK ++K G S
Sbjct: 168 HKKKAAKKHKKSHKKKSSKKHGKSSKKKSSKKHGKSHK-KKSSKKHGKSS 216
Score = 39.3 bits (90), Expect = 0.051
Identities = 21/50 (42%), Positives = 28/50 (56%)
Frame = -3
Query: 679 HTVKNKKQQKSRKKKKYEKKNGKKGQKGNSSSHGGSGKDKKQARKQGGHS 530
H K+ K+ KKK KK+GK +K +S HG S K KK ++K G S
Sbjct: 180 HKKKSSKKHGKSSKKKSSKKHGKSHKKKSSKKHGKSSK-KKSSKKHGKSS 228
Score = 38.9 bits (89), Expect = 0.066
Identities = 20/47 (42%), Positives = 27/47 (56%)
Frame = -3
Query: 679 HTVKNKKQQKSRKKKKYEKKNGKKGQKGNSSSHGGSGKDKKQARKQG 539
H K+ K+ KKK KK+GK +K +S HG S K KK ++K G
Sbjct: 204 HKKKSSKKHGKSSKKKSSKKHGKSSKKKSSKKHGKSHK-KKSSKKHG 249
Score = 37.7 bits (86), Expect = 0.15
Identities = 20/64 (31%), Positives = 30/64 (46%)
Frame = -3
Query: 679 HTVKNKKQQKSRKKKKYEKKNGKKGQKGNSSSHGGSGKDKKQARKQGGHSDLSFESLDSH 500
H K+ K+ KKK KK+GK +K +S HG S K KK ++K +L
Sbjct: 240 HKKKSSKKHGKSNKKKSSKKHGKSSKKKSSKKHGKSNK-KKSSKKHASKGSAVIATLSRK 298
Query: 499 DNVT 488
++
Sbjct: 299 TGIS 302
Score = 37.4 bits (85), Expect = 0.19
Identities = 21/43 (48%), Positives = 27/43 (61%)
Frame = -3
Query: 667 NKKQQKSRKKKKYEKKNGKKGQKGNSSSHGGSGKDKKQARKQG 539
+KK KS KKK KK+GK +K +S HG S K KK ++K G
Sbjct: 233 SKKHGKSHKKKS-SKKHGKSNKKKSSKKHGKSSK-KKSSKKHG 273
Score = 37.4 bits (85), Expect = 0.19
Identities = 21/43 (48%), Positives = 27/43 (61%)
Frame = -3
Query: 667 NKKQQKSRKKKKYEKKNGKKGQKGNSSSHGGSGKDKKQARKQG 539
+KK KS KKK KK+GK +K +S HG S K KK ++K G
Sbjct: 197 SKKHGKSHKKKS-SKKHGKSSKKKSSKKHGKSSK-KKSSKKHG 237
Score = 37.4 bits (85), Expect = 0.19
Identities = 20/47 (42%), Positives = 27/47 (56%)
Frame = -3
Query: 670 KNKKQQKSRKKKKYEKKNGKKGQKGNSSSHGGSGKDKKQARKQGGHS 530
K+ K+ KKK KK+GK +K +S HG S K KK ++K G S
Sbjct: 219 KSSKKHGKSSKKKSSKKHGKSHKKKSSKKHGKSNK-KKSSKKHGKSS 264
Score = 33.5 bits (75), Expect = 2.8
Identities = 19/47 (40%), Positives = 25/47 (52%)
Frame = -3
Query: 679 HTVKNKKQQKSRKKKKYEKKNGKKGQKGNSSSHGGSGKDKKQARKQG 539
H K K+ KKK KK+ K +K +S HG S K KK ++K G
Sbjct: 156 HKKKAAKKHGKSHKKKAAKKHKKSHKKKSSKKHGKSSK-KKSSKKHG 201
Score = 33.5 bits (75), Expect = 2.8
Identities = 20/50 (40%), Positives = 26/50 (52%)
Frame = -3
Query: 679 HTVKNKKQQKSRKKKKYEKKNGKKGQKGNSSSHGGSGKDKKQARKQGGHS 530
H K K+ K KKK KK+GK +K + H S K KK ++K G S
Sbjct: 144 HKKKAAKKHKKSHKKKAAKKHGKSHKKKAAKKHKKSHK-KKSSKKHGKSS 192
Score = 32.3 bits (72), Expect = 6.2
Identities = 18/53 (33%), Positives = 24/53 (44%)
Frame = -3
Query: 679 HTVKNKKQQKSRKKKKYEKKNGKKGQKGNSSSHGGSGKDKKQARKQGGHSDLS 521
H K K+ K KKK KK+ K +K + HG S K K + + H S
Sbjct: 132 HKKKAAKKHKKSHKKKAAKKHKKSHKKKAAKKHGKSHKKKAAKKHKKSHKKKS 184
>gb|EAA21353.1| similar to yeast ncl1-related [Plasmodium yoelii yoelii]
Length = 1154
Score = 38.9 bits (89), Expect = 0.066
Identities = 31/127 (24%), Positives = 61/127 (47%), Gaps = 10/127 (7%)
Frame = -3
Query: 676 TVKNKKQQKSRKKK-KYEKKNGKKGQKGNSSSHGGSGKDKKQARKQGGHSDLSFESLDSH 500
T++ K +KS+KKK K +K+N K+ +K N +++KQ K G + ++ + D
Sbjct: 583 TIRRYKNKKSKKKKNKKKKQNEKQDEKQNEK------QNEKQNEKHGINKNMDTSANDKI 636
Query: 499 DNVTGTSELDAL------DVRSHDSFCGTS---FLKNSVTKVHSLVAEAQ*VNGLNDILF 347
+N+ + E+ D+ HD+ T + +TK +++V + +N N +
Sbjct: 637 NNIHHSDEISEAIEKEHNDIIPHDNHVQTEKQIIGNDEITKSYNMVGSDEFMNDYNMVNN 696
Query: 346 LAMYINN 326
+ NN
Sbjct: 697 FDIIKNN 703
>ref|XP_240573.1| hypothetical protein XP_240573 [Rattus norvegicus]
Length = 212
Score = 38.9 bits (89), Expect = 0.066
Identities = 31/97 (31%), Positives = 43/97 (43%), Gaps = 15/97 (15%)
Frame = -3
Query: 670 KNKKQQKSRKKKKYEKKNGKKGQKGNSSSHGGSGK-------DKKQARKQGGHSDLSFE- 515
K KK++K +KKKK +KK KK G GG GK + ++ R G +S F+
Sbjct: 54 KKKKKKKKKKKKKKKKKKKKKRGGGRGRGEGGGGKGGGKERREDRRMRAFGQNSGGLFKQ 113
Query: 514 ----SLDSHDNVTGTSELDALDVR---SHDSFCGTSF 425
++D V +LD L R H S SF
Sbjct: 114 IWGITIDWETEVIACRDLDQLPHRHNLQHQSVVSLSF 150
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 576,953,819
Number of Sequences: 1393205
Number of extensions: 12470958
Number of successful extensions: 62509
Number of sequences better than 10.0: 201
Number of HSP's better than 10.0 without gapping: 50659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60552
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 30270070164
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
