Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001971A_C01 KMC001971A_c01
(639 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAB88665.1| tubby-like protein [Cicer arietinum] 196 2e-49
pir||E84562 probable Tub family protein [imported] - Arabidopsis... 172 3e-42
ref|NP_179420.2| F-box containing tubby family protein; protein ... 172 3e-42
ref|NP_175160.1| F-box containing tubby family protein; protein ... 164 7e-40
ref|NP_173899.1| F-box containing tubby family protein; protein ... 159 2e-38
>emb|CAB88665.1| tubby-like protein [Cicer arietinum]
Length = 411
Score = 196 bits (498), Expect = 2e-49
Identities = 94/115 (81%), Positives = 103/115 (88%)
Frame = -2
Query: 638 ISDLTHATLSKVPVQSEGSLEGLVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAA 459
++D LS++P S+GS+E LVLKNKAPRWHEQLQCWCLNF GRVTVASVKNFQLVAA
Sbjct: 297 MTDSYSGNLSELPELSQGSVEPLVLKNKAPRWHEQLQCWCLNFVGRVTVASVKNFQLVAA 356
Query: 458 VDPSHNVSPAEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFALCLSSFDTKPACE 294
VDPSHNVS EQE+VILQFGKIGKDIFTMDY YPLSAFQAFA+CL+SFDTKPACE
Sbjct: 357 VDPSHNVSSEEQERVILQFGKIGKDIFTMDYSYPLSAFQAFAICLTSFDTKPACE 411
>pir||E84562 probable Tub family protein [imported] - Arabidopsis thaliana
gi|4309738|gb|AAD15508.1| putative Tub family protein
[Arabidopsis thaliana]
Length = 386
Score = 172 bits (437), Expect = 3e-42
Identities = 80/93 (86%), Positives = 86/93 (92%)
Frame = -2
Query: 572 LVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAVDPSHNVSPAEQEKVILQFGKI 393
LVLKNK+PRWHEQLQCWCLNFKGRVTVASVKNFQLVA +D S + P E E+VILQFGKI
Sbjct: 293 LVLKNKSPRWHEQLQCWCLNFKGRVTVASVKNFQLVAEIDASLDAPPEEHERVILQFGKI 352
Query: 392 GKDIFTMDYRYPLSAFQAFALCLSSFDTKPACE 294
GKDIFTMDYRYPLSAFQAFA+C+SSFDTKPACE
Sbjct: 353 GKDIFTMDYRYPLSAFQAFAICISSFDTKPACE 385
>ref|NP_179420.2| F-box containing tubby family protein; protein id: At2g18280.1
[Arabidopsis thaliana] gi|27372512|gb|AAK98801.1|
tubby-like protein 2 [Arabidopsis thaliana]
Length = 394
Score = 172 bits (437), Expect = 3e-42
Identities = 80/93 (86%), Positives = 86/93 (92%)
Frame = -2
Query: 572 LVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAVDPSHNVSPAEQEKVILQFGKI 393
LVLKNK+PRWHEQLQCWCLNFKGRVTVASVKNFQLVA +D S + P E E+VILQFGKI
Sbjct: 301 LVLKNKSPRWHEQLQCWCLNFKGRVTVASVKNFQLVAEIDASLDAPPEEHERVILQFGKI 360
Query: 392 GKDIFTMDYRYPLSAFQAFALCLSSFDTKPACE 294
GKDIFTMDYRYPLSAFQAFA+C+SSFDTKPACE
Sbjct: 361 GKDIFTMDYRYPLSAFQAFAICISSFDTKPACE 393
>ref|NP_175160.1| F-box containing tubby family protein; protein id: At1g47270.1
[Arabidopsis thaliana] gi|25405194|pir||E96513 unknown
protein, 3155-1759 [imported] - Arabidopsis thaliana
gi|12325396|gb|AAG52638.1|AC079677_2 unknown protein;
3155-1759 [Arabidopsis thaliana]
Length = 388
Score = 164 bits (416), Expect = 7e-40
Identities = 78/98 (79%), Positives = 86/98 (87%), Gaps = 3/98 (3%)
Frame = -2
Query: 578 EGLVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAV---DPSHNVSPAEQEKVIL 408
E L+LKNK+PRWHEQLQCWCLNFKGRVTVASVKNFQLVAA + N+ EQ++VIL
Sbjct: 291 EPLILKNKSPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAAEAGKNMNIPEEEQDRVIL 350
Query: 407 QFGKIGKDIFTMDYRYPLSAFQAFALCLSSFDTKPACE 294
QFGKIGKDIFTMDYRYP+SAFQAFA+CLSSFDTKP CE
Sbjct: 351 QFGKIGKDIFTMDYRYPISAFQAFAICLSSFDTKPVCE 388
>ref|NP_173899.1| F-box containing tubby family protein; protein id: At1g25280.1
[Arabidopsis thaliana] gi|25518577|pir||E86382
hypothetical protein F4F7.33 [imported] - Arabidopsis
thaliana gi|11067277|gb|AAG28805.1|AC079374_8 unknown
protein [Arabidopsis thaliana]
Length = 445
Score = 159 bits (403), Expect = 2e-38
Identities = 79/112 (70%), Positives = 87/112 (77%), Gaps = 11/112 (9%)
Frame = -2
Query: 596 QSEGSLEGLVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAVDPSHNVSPA---- 429
+ E S L+LKNK PRWHEQLQCWCLNF+GRVTVASVKNFQLVAA P + A
Sbjct: 334 EEEASFRPLILKNKQPRWHEQLQCWCLNFRGRVTVASVKNFQLVAARQPQPQGTGAAAAP 393
Query: 428 -------EQEKVILQFGKIGKDIFTMDYRYPLSAFQAFALCLSSFDTKPACE 294
EQ+KVILQFGK+GKD+FTMDYRYPLSAFQAFA+CLSSFDTK ACE
Sbjct: 394 TSAPAHPEQDKVILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 445
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 525,527,599
Number of Sequences: 1393205
Number of extensions: 10727177
Number of successful extensions: 24689
Number of sequences better than 10.0: 85
Number of HSP's better than 10.0 without gapping: 23830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24590
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26723359358
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
