Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001969A_C01 KMC001969A_c01
(556 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAA62273.1| ORF2 36 0.36
sp|P14544|COX1_LEITA Cytochrome c oxidase polypeptide I gi|83977... 35 0.80
pir||S52053 cytochrome-c oxidase (EC 1.9.3.1) chain I - Trypanop... 34 1.0
pir||S34960 NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) chain ... 34 1.4
ref|NP_243791.1| maltose/maltodextrin transport system (permease... 33 2.3
>gb|AAA62273.1| ORF2
Length = 141
Score = 35.8 bits (81), Expect = 0.36
Identities = 37/126 (29%), Positives = 49/126 (38%), Gaps = 15/126 (11%)
Frame = -3
Query: 392 IFYCMFSFQLLC--PW*CFPALVFAHYAVIMKLCYLLVPTVWYPS*LVY*SLAHGFL*WR 219
IFYC F F C W CF V V L + +V W +VY L
Sbjct: 20 IFYCCFVFCFCCLFVWVCFICFVIV---VCFFLLFWVVIFYWCFDCIVYFFCDVIILFIF 76
Query: 218 GIV*RLHSLECFAPIIILNFYPL*CFLLCIFAI-------------FLFAVYVVLCVELW 78
L L C ++ L F+ + C +LC F I FLF +V +C LW
Sbjct: 77 FFYFVLCFLYCCFYLVCLVFFCIFCCVLCYFLIYFLCCFLFWVVFLFLFFFFVYVCFYLW 136
Query: 77 CCILYC 60
+L+C
Sbjct: 137 -LLLFC 141
>sp|P14544|COX1_LEITA Cytochrome c oxidase polypeptide I gi|83977|pir||D30010
cytochrome-c oxidase (EC 1.9.3.1) chain I - Leishmania
tarentolae mitochondrion
Length = 549
Score = 34.7 bits (78), Expect = 0.80
Identities = 17/39 (43%), Positives = 22/39 (55%)
Frame = -3
Query: 143 FLLCIFAIFLFAVYVVLCVELWCCILYCFFELPSCSWLP 27
FL +F +FLF Y + V L+ LYCFF +WLP
Sbjct: 469 FLCALFCVFLFWDYCLFFVSLFVFSLYCFFYF--STWLP 505
>pir||S52053 cytochrome-c oxidase (EC 1.9.3.1) chain I - Trypanoplasma borreli
mitochondrion gi|563140|gb|AAA73454.1| cytochrome c
oxidase subunit 1
Length = 546
Score = 34.3 bits (77), Expect = 1.0
Identities = 31/101 (30%), Positives = 49/101 (47%), Gaps = 8/101 (7%)
Frame = -3
Query: 332 VFAHYAVIMKLCYLLVPTVWYPS*LVY*SLAHGFL*WRGIV*RLHSLECFAPIIILNFYP 153
V + + C+ +P ++ LVY +L FL + LHSL ++ ++ YP
Sbjct: 387 VIGVFGGVFHFCWKWIPLEFFIF-LVYYNLIVLFLGSNILFYPLHSLGLYSFPRRISDYP 445
Query: 152 L*CFLLCIFAIFLFAVYVVLCVELWCCILY--------CFF 54
+ FLL F + LF V +LC+ L+CC L+ CFF
Sbjct: 446 I-NFLLYSF-LMLFGVIFLLCLVLFCCCLFSVLLFWDCCFF 484
>pir||S34960 NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Crithidia
oncopelti mitochondrion gi|12882|emb|CAA39492.1| NADH
dehydrogenase subunit 5 [Crithidia oncopelti]
Length = 590
Score = 33.9 bits (76), Expect = 1.4
Identities = 17/46 (36%), Positives = 25/46 (53%), Gaps = 1/46 (2%)
Frame = -3
Query: 173 IILNFYPL*CFLLC-IFAIFLFAVYVVLCVELWCCILYCFFELPSC 39
+I N++ L F LC +F F A + L + CC++YCF L C
Sbjct: 423 VIYNYFLL--FFLCFVFKCFCLADCLFLLFDFECCLIYCFLGLYMC 466
>ref|NP_243791.1| maltose/maltodextrin transport system (permease) [Bacillus
halodurans] gi|25297538|pir||E84015 maltose/maltodextrin
transport system (permease) BH2925 [imported] - Bacillus
halodurans (strain C-125) gi|10175547|dbj|BAB06644.1|
maltose/maltodextrin transport system (permease)
[Bacillus halodurans]
Length = 430
Score = 33.1 bits (74), Expect = 2.3
Identities = 14/37 (37%), Positives = 20/37 (53%)
Frame = -1
Query: 118 FFLLSMWSFVWNFGAASCTVSLSYLLALGYLSITIKF 8
FF + W+ +W F A SC ++L LA+ IKF
Sbjct: 193 FFSVFSWTLIWTFVATSCQIALGLFLAMMVNDPRIKF 229
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 472,261,847
Number of Sequences: 1393205
Number of extensions: 9587014
Number of successful extensions: 25965
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 24877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25916
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19521267756
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
