Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001967A_C02 KMC001967A_c02
(596 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T00696 probable methylenetetrahydrofolate reductase [import... 166 2e-40
ref|NP_566011.1| putative methylenetetrahydrofolate reductase; p... 166 2e-40
gb|AAK43892.1|AF370515_1 putative methylenetetrahydrofolate redu... 166 2e-40
emb|CAB53783.1| methylenetetrahydrofolate reductase [Arabidopsis... 166 2e-40
gb|AAD51733.1|AF174486_1 methylenetetrahydrofolate reductase [Ze... 158 6e-38
>pir||T00696 probable methylenetetrahydrofolate reductase [imported] -
Arabidopsis thaliana
Length = 606
Score = 166 bits (420), Expect = 2e-40
Identities = 80/103 (77%), Positives = 91/103 (87%), Gaps = 4/103 (3%)
Frame = -2
Query: 595 GIMPINNYKGFIRMTGFCKTKIPAEIMAALEPIKDNEEAVKAYGIHLGTEMCKKILAHGF 416
GIMPINNY+GF+RMTGFCKTKIP E+MAALEPIKDNEEAVKAYGIHLGTEMCKK+LAHG
Sbjct: 232 GIMPINNYRGFLRMTGFCKTKIPVEVMAALEPIKDNEEAVKAYGIHLGTEMCKKMLAHGV 291
Query: 415 KTLHLYTLNLEKSALPILKNLGLIEET----SIPRTRPANAIQ 299
K+LHLYTLN+EKSAL IL NLG+I+E+ S+P RPAN +
Sbjct: 292 KSLHLYTLNMEKSALAILMNLGMIDESKISRSLPWRRPANVFR 334
>ref|NP_566011.1| putative methylenetetrahydrofolate reductase; protein id:
At2g44160.1, supported by cDNA: gi_13877628, supported
by cDNA: gi_15215809, supported by cDNA: gi_5911426
[Arabidopsis thaliana] gi|22096355|sp|O80585|MTHR_ARATH
Methylenetetrahydrofolate reductase (MTHFR2)
gi|5911427|gb|AAD55788.1|AF181967_1
methylenetetrahydrofolate reductase MTHFR2 [Arabidopsis
thaliana] gi|15215810|gb|AAK91450.1| At2g44160/F6E13.29
[Arabidopsis thaliana] gi|20197075|gb|AAC23420.2|
putative methylenetetrahydrofolate reductase
[Arabidopsis thaliana]
Length = 594
Score = 166 bits (420), Expect = 2e-40
Identities = 80/103 (77%), Positives = 91/103 (87%), Gaps = 4/103 (3%)
Frame = -2
Query: 595 GIMPINNYKGFIRMTGFCKTKIPAEIMAALEPIKDNEEAVKAYGIHLGTEMCKKILAHGF 416
GIMPINNY+GF+RMTGFCKTKIP E+MAALEPIKDNEEAVKAYGIHLGTEMCKK+LAHG
Sbjct: 220 GIMPINNYRGFLRMTGFCKTKIPVEVMAALEPIKDNEEAVKAYGIHLGTEMCKKMLAHGV 279
Query: 415 KTLHLYTLNLEKSALPILKNLGLIEET----SIPRTRPANAIQ 299
K+LHLYTLN+EKSAL IL NLG+I+E+ S+P RPAN +
Sbjct: 280 KSLHLYTLNMEKSALAILMNLGMIDESKISRSLPWRRPANVFR 322
>gb|AAK43892.1|AF370515_1 putative methylenetetrahydrofolate reductase [Arabidopsis thaliana]
Length = 594
Score = 166 bits (420), Expect = 2e-40
Identities = 80/103 (77%), Positives = 91/103 (87%), Gaps = 4/103 (3%)
Frame = -2
Query: 595 GIMPINNYKGFIRMTGFCKTKIPAEIMAALEPIKDNEEAVKAYGIHLGTEMCKKILAHGF 416
GIMPINNY+GF+RMTGFCKTKIP E+MAALEPIKDNEEAVKAYGIHLGTEMCKK+LAHG
Sbjct: 220 GIMPINNYRGFLRMTGFCKTKIPVEVMAALEPIKDNEEAVKAYGIHLGTEMCKKMLAHGV 279
Query: 415 KTLHLYTLNLEKSALPILKNLGLIEET----SIPRTRPANAIQ 299
K+LHLYTLN+EKSAL IL NLG+I+E+ S+P RPAN +
Sbjct: 280 KSLHLYTLNMEKSALAILMNLGMIDESKISRSLPWRRPANVFR 322
>emb|CAB53783.1| methylenetetrahydrofolate reductase [Arabidopsis thaliana]
Length = 594
Score = 166 bits (420), Expect = 2e-40
Identities = 80/103 (77%), Positives = 91/103 (87%), Gaps = 4/103 (3%)
Frame = -2
Query: 595 GIMPINNYKGFIRMTGFCKTKIPAEIMAALEPIKDNEEAVKAYGIHLGTEMCKKILAHGF 416
GIMPINNY+GF+RMTGFCKTKIP E+MAALEPIKDNEEAVKAYGIHLGTEMCKK+LAHG
Sbjct: 220 GIMPINNYRGFLRMTGFCKTKIPVEVMAALEPIKDNEEAVKAYGIHLGTEMCKKMLAHGV 279
Query: 415 KTLHLYTLNLEKSALPILKNLGLIEET----SIPRTRPANAIQ 299
K+LHLYTLN+EKSAL IL NLG+I+E+ S+P RPAN +
Sbjct: 280 KSLHLYTLNMEKSALAILMNLGMIDESKISRSLPWRRPANVFR 322
>gb|AAD51733.1|AF174486_1 methylenetetrahydrofolate reductase [Zea mays]
Length = 593
Score = 158 bits (399), Expect = 6e-38
Identities = 75/94 (79%), Positives = 84/94 (88%)
Frame = -2
Query: 595 GIMPINNYKGFIRMTGFCKTKIPAEIMAALEPIKDNEEAVKAYGIHLGTEMCKKILAHGF 416
GIMPINNYKGF+RMTGFCKTKIP+EI AAL+PIKDNEEAV+ YGIHLGTEMCKKILA G
Sbjct: 220 GIMPINNYKGFLRMTGFCKTKIPSEITAALDPIKDNEEAVRQYGIHLGTEMCKKILATGI 279
Query: 415 KTLHLYTLNLEKSALPILKNLGLIEETSIPRTRP 314
KTLHLYTLN++KSA+ IL NLGLIEE+ + R P
Sbjct: 280 KTLHLYTLNMDKSAIGILMNLGLIEESKVSRPLP 313
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 462,845,331
Number of Sequences: 1393205
Number of extensions: 9301265
Number of successful extensions: 20991
Number of sequences better than 10.0: 112
Number of HSP's better than 10.0 without gapping: 20280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20954
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23140425222
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
