Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001965A_C01 KMC001965A_c01
(573 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_563834.1| expressed protein; protein id: At1g09020.1, sup... 50 3e-05
gb|AAG10141.1|AF250335_1 putative activator subunit of SNF1-rela... 50 3e-05
gb|AAG31751.1|AF276085_1 protein kinase AKINbetagamma-1 [Zea mays] 45 5e-04
gb|AAG31752.1|AF276086_1 protein kinase AKINbetagamma-2 [Zea mays] 45 5e-04
ref|NP_036464.1| Mitochondrial Acyl-CoA Thioesterase [Homo sapie... 33 1.9
>ref|NP_563834.1| expressed protein; protein id: At1g09020.1, supported by cDNA:
gi_16612254, supported by cDNA: gi_9965728 [Arabidopsis
thaliana] gi|16612255|gb|AAL27498.1|AF439826_1
At1g09020/F7G19_11 [Arabidopsis thaliana]
gi|23308443|gb|AAN18191.1| At1g09020/F7G19_11
[Arabidopsis thaliana]
Length = 487
Score = 49.7 bits (117), Expect = 3e-05
Identities = 25/26 (96%), Positives = 26/26 (99%)
Frame = -2
Query: 572 LVIVEAGSKRVEGIISLSDVFKFLLG 495
LVIVEAGSKRVEGIISLSDVF+FLLG
Sbjct: 461 LVIVEAGSKRVEGIISLSDVFQFLLG 486
>gb|AAG10141.1|AF250335_1 putative activator subunit of SNF1-related protein kinase SNF4
[Arabidopsis thaliana]
Length = 382
Score = 49.7 bits (117), Expect = 3e-05
Identities = 25/26 (96%), Positives = 26/26 (99%)
Frame = -2
Query: 572 LVIVEAGSKRVEGIISLSDVFKFLLG 495
LVIVEAGSKRVEGIISLSDVF+FLLG
Sbjct: 356 LVIVEAGSKRVEGIISLSDVFQFLLG 381
>gb|AAG31751.1|AF276085_1 protein kinase AKINbetagamma-1 [Zea mays]
Length = 497
Score = 45.4 bits (106), Expect = 5e-04
Identities = 22/23 (95%), Positives = 23/23 (99%)
Frame = -2
Query: 566 IVEAGSKRVEGIISLSDVFKFLL 498
IVEAGSKRVEGIISLSD+FKFLL
Sbjct: 473 IVEAGSKRVEGIISLSDIFKFLL 495
>gb|AAG31752.1|AF276086_1 protein kinase AKINbetagamma-2 [Zea mays]
Length = 496
Score = 45.4 bits (106), Expect = 5e-04
Identities = 22/23 (95%), Positives = 23/23 (99%)
Frame = -2
Query: 566 IVEAGSKRVEGIISLSDVFKFLL 498
IVEAGSKRVEGIISLSD+FKFLL
Sbjct: 472 IVEAGSKRVEGIISLSDIFKFLL 494
>ref|NP_036464.1| Mitochondrial Acyl-CoA Thioesterase [Homo sapiens]
gi|12229616|sp|Q9Y305|CG16_HUMAN Putative acyl-CoA
thioester hydrolase CGI-16
gi|4680671|gb|AAD27725.1|AF132950_1 CGI-16 protein [Homo
sapiens]
Length = 406
Score = 33.5 bits (75), Expect = 1.9
Identities = 25/84 (29%), Positives = 35/84 (40%), Gaps = 2/84 (2%)
Frame = +3
Query: 252 TQILKMCP-ARRRTRV-EMFKEKTDPPFTDFSLQFLSQKSMWANI*RYPSSQKLLKSEQL 425
T +LKM P A RT + EMF DP F + L ++W + KL E
Sbjct: 213 TSLLKMAPSAEERTTIHEMFLSTLDPKTISFRSRVLPSNAVWM------ENSKLKSLEIC 266
Query: 426 RKQVPMLLTLLFPSYKMANTYQLA 497
Q + +F + M Y+LA
Sbjct: 267 HPQERNIFNRIFGGFLMRKAYELA 290
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 463,216,653
Number of Sequences: 1393205
Number of extensions: 9283542
Number of successful extensions: 21156
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 20657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21151
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21243732558
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
