Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001964A_C01 KMC001964A_c01
(763 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_036898.1| cyclin D3 [Rattus norvegicus] gi|1345742|sp|P48... 32 7.5
gb|AAH04076.1| cyclin D3 [Mus musculus] 32 7.5
ref|NP_031658.1| cyclin D3 [Mus musculus] gi|231744|sp|P30282|CG... 32 7.5
pir||C40035 cyclin-like protein Cyl3 - mouse (fragment) 32 7.5
ref|NP_782171.1| phage-related protein [Clostridium tetani E88] ... 32 7.5
>ref|NP_036898.1| cyclin D3 [Rattus norvegicus] gi|1345742|sp|P48961|CGD3_RAT
G1/S-specific cyclin D3 gi|1083635|pir||JC4012 cyclin D3
- rat gi|577337|dbj|BAA03816.1| cyclin D3 [Rattus
norvegicus]
Length = 293
Score = 32.3 bits (72), Expect = 7.5
Identities = 16/43 (37%), Positives = 25/43 (57%)
Frame = +2
Query: 98 QSSVFSTIMPYLQEYIIKLPCQTKEVQIHILYTICF*LVTKLR 226
+ VF M YL Y+ +P T++ Q+ +L T+C L +KLR
Sbjct: 74 EEDVFPLAMNYLDRYLSCVP--TRKAQLQLLGTVCLLLASKLR 114
>gb|AAH04076.1| cyclin D3 [Mus musculus]
Length = 292
Score = 32.3 bits (72), Expect = 7.5
Identities = 16/43 (37%), Positives = 25/43 (57%)
Frame = +2
Query: 98 QSSVFSTIMPYLQEYIIKLPCQTKEVQIHILYTICF*LVTKLR 226
+ VF M YL Y+ +P T++ Q+ +L T+C L +KLR
Sbjct: 74 EEDVFPLAMNYLDRYLSCVP--TRKAQLQLLGTVCLLLASKLR 114
>ref|NP_031658.1| cyclin D3 [Mus musculus] gi|231744|sp|P30282|CGD3_MOUSE
G1/S-specific cyclin D3 gi|192882|gb|AAA37504.1| cyclin
3 gi|1730281|gb|AAC53363.1| cyclin D3
gi|13542808|gb|AAH05605.1| cyclin D3 [Mus musculus]
Length = 292
Score = 32.3 bits (72), Expect = 7.5
Identities = 16/43 (37%), Positives = 25/43 (57%)
Frame = +2
Query: 98 QSSVFSTIMPYLQEYIIKLPCQTKEVQIHILYTICF*LVTKLR 226
+ VF M YL Y+ +P T++ Q+ +L T+C L +KLR
Sbjct: 74 EEDVFPLAMNYLDRYLSCVP--TRKAQLQLLGTVCLLLASKLR 114
>pir||C40035 cyclin-like protein Cyl3 - mouse (fragment)
Length = 237
Score = 32.3 bits (72), Expect = 7.5
Identities = 16/43 (37%), Positives = 25/43 (57%)
Frame = +2
Query: 98 QSSVFSTIMPYLQEYIIKLPCQTKEVQIHILYTICF*LVTKLR 226
+ VF M YL Y+ +P T++ Q+ +L T+C L +KLR
Sbjct: 19 EEDVFPLAMNYLDRYLSCVP--TRKAQLQLLGTVCLLLASKLR 59
>ref|NP_782171.1| phage-related protein [Clostridium tetani E88]
gi|28203667|gb|AAO36108.1| phage-related protein
[Clostridium tetani E88]
Length = 243
Score = 32.3 bits (72), Expect = 7.5
Identities = 44/150 (29%), Positives = 64/150 (42%), Gaps = 11/150 (7%)
Frame = +3
Query: 129 IYKSIS*SYPAKPKKYKFTFCTLFVSDWSPSLDIFVCSQFIESSNGGIFLFTSYQTVSSF 308
I+ +S P K F T+ +S L IF+ S F S+N FLF +S+
Sbjct: 56 IFSILSSKTPCVYKYATFPLFTILIS-----LSIFLSSNF--SNN---FLFNLLLYLSNS 105
Query: 309 QPNLFLILQHKLR*INK*K*SQFF---------LCTNPNL*SNWWC--SLWVPNPSSRYF 455
NLF ++ + + I FF +C + L +C + + P RYF
Sbjct: 106 SSNLFSLISNSILSILHSSCYTFFHLFPLAILLMCVSLTL----YCLANSFCVTPFLRYF 161
Query: 456 LFLVSSLFLRLQFFFRFLIFTAKKMFPVVL 545
L ++S FL LQ F F F A +F V L
Sbjct: 162 LISITSSFLNLQLPF-FSPFCAAFIFVVSL 190
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 613,271,737
Number of Sequences: 1393205
Number of extensions: 12946689
Number of successful extensions: 46687
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 45348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46667
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 36974710344
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
