Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001958A_C02 KMC001958A_c02
(700 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_777828.1| phospho-N-acetylmuramoyl-pentapeptide-transfera... 33 3.8
gb|AAF65408.1|AF238312_1 putative serine-threonine protein kinas... 32 6.5
ref|NP_445990.1| lysosomal-associated protein transmembrane 5 [R... 32 8.5
>ref|NP_777828.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Buchnera
aphidicola (Baizongia pistaciae)]
gi|27904099|gb|AAO26933.1|
phospho-N-acetylmuramoyl-pentapeptide-transferase
[Buchnera aphidicola str. Bp (Baizongia pistaciae)]
Length = 340
Score = 33.1 bits (74), Expect = 3.8
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = -3
Query: 674 YFATVGIGHKLVLLS*LDFLVVVVVLFQCTNMRMLLFFRRQTHLILVF*CVSVP 513
YFA +G + + L LD L +V ++F TN+ ++ F +L F + +P
Sbjct: 160 YFAIIGTSNAVNLTDGLDGLAIVPIIFVTTNLSIISFISGNVNLSYYFNTIYIP 213
>gb|AAF65408.1|AF238312_1 putative serine-threonine protein kinase MkcB [Dictyostelium
discoideum]
Length = 714
Score = 32.3 bits (72), Expect = 6.5
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +1
Query: 559 LKNSNILILVHWNNTTTTTKKSNQLNNTSLCPIPT 663
L N++I I + NNTT T +N +++T P+P+
Sbjct: 136 LNNNDISISTNTNNTTNNTNNNNNIDSTLTTPVPS 170
>ref|NP_445990.1| lysosomal-associated protein transmembrane 5 [Rattus norvegicus]
gi|9581844|dbj|BAB03459.1| GCD-10 [Rattus norvegicus]
Length = 261
Score = 32.0 bits (71), Expect = 8.5
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = -2
Query: 501 VRCRFSKSTNLMSYDMISSFLIPGVLLLFA 412
V CRFSK L D++SSFL+ GVL + +
Sbjct: 48 VSCRFSKMPYLRLADLLSSFLLIGVLFIIS 77
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 600,136,393
Number of Sequences: 1393205
Number of extensions: 13124810
Number of successful extensions: 30925
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 29079
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30832
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 31967457276
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
