Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001957A_C01 KMC001957A_c01
(666 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_198957.1| homeodomain protein, BELL1 (BEL1); protein id: ... 56 8e-08
pir||A57632 homeotic protein BEL1 - Arabidopsis thaliana 56 8e-08
gb|AAN03624.1|AF406700_1 BEL1-related homeotic protein 14 [Solan... 39 4e-05
dbj|BAA85436.1| EST AU056781(S20871) corresponds to a region of ... 35 0.70
pir||P1WLR1 L1 protein - rhesus papillomavirus (type 1) 33 3.5
>ref|NP_198957.1| homeodomain protein, BELL1 (BEL1); protein id: At5g41410.1,
supported by cDNA: gi_1122532, supported by cDNA:
gi_15146192, supported by cDNA: gi_15450865 [Arabidopsis
thaliana] gi|9758050|dbj|BAB08513.1| homeotic protein
BEL1 homolog [Arabidopsis thaliana]
gi|15146193|gb|AAK83580.1| AT5g41410/MYC6_12
[Arabidopsis thaliana] gi|27363268|gb|AAO11553.1|
At5g41410/MYC6_12 [Arabidopsis thaliana]
gi|28202125|gb|AAB05099.2| homeobox protein [Arabidopsis
thaliana]
Length = 611
Score = 56.2 bits (134), Expect(2) = 8e-08
Identities = 29/59 (49%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Frame = -2
Query: 521 GSGVVSLAFPPPQATQGSMYYTRDQVDQECPTGQFSLLDGEG-QNMPYRNLMGTQLLHD 348
G+G VSLA P A G ++Y RD +++ S+LD + QN+PYRNLMG QLLHD
Sbjct: 551 GNGGVSLALSPVTAQGGQLFYGRDHIEEGPVQYSASMLDDDQVQNLPYRNLMGAQLLHD 609
Score = 21.9 bits (45), Expect(2) = 8e-08
Identities = 17/46 (36%), Positives = 20/46 (42%)
Frame = -3
Query: 664 GVDLDFSSYATHHSPSMQVSYTSAGNNVNPGFRGGGGVSLTLGLQQ 527
G DFS Y + V+Y G G VSLTLGLQ+
Sbjct: 515 GSTFDFSLYG-----NQAVTYAGEGGP-------RGDVSLTLGLQR 548
>pir||A57632 homeotic protein BEL1 - Arabidopsis thaliana
Length = 610
Score = 56.2 bits (134), Expect(2) = 8e-08
Identities = 29/59 (49%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Frame = -2
Query: 521 GSGVVSLAFPPPQATQGSMYYTRDQVDQECPTGQFSLLDGEG-QNMPYRNLMGTQLLHD 348
G+G VSLA P A G ++Y RD +++ S+LD + QN+PYRNLMG QLLHD
Sbjct: 550 GNGGVSLALSPVTAQGGQLFYGRDHIEEGPVQYSASMLDDDQVQNLPYRNLMGAQLLHD 608
Score = 21.9 bits (45), Expect(2) = 8e-08
Identities = 17/46 (36%), Positives = 20/46 (42%)
Frame = -3
Query: 664 GVDLDFSSYATHHSPSMQVSYTSAGNNVNPGFRGGGGVSLTLGLQQ 527
G DFS Y + V+Y G G VSLTLGLQ+
Sbjct: 514 GSTFDFSLYG-----NQAVTYAGEGGP-------RGDVSLTLGLQR 547
>gb|AAN03624.1|AF406700_1 BEL1-related homeotic protein 14 [Solanum tuberosum]
Length = 532
Score = 39.3 bits (90), Expect(2) = 4e-05
Identities = 26/57 (45%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Frame = -2
Query: 524 GGSGVVSLAFPP----PQATQGSMYYTRDQVDQECPTGQFSLLDGEGQNMPYRNLMG 366
GGSG S+ P Q S++Y RD DQ SLLD E QN+PYRNL G
Sbjct: 475 GGSGGSSMGLTTFSSQPSHNQSSLFYPRDD-DQ---VQYSSLLDSENQNLPYRNLDG 527
Score = 29.6 bits (65), Expect(2) = 4e-05
Identities = 18/45 (40%), Positives = 27/45 (60%)
Frame = -3
Query: 661 VDLDFSSYATHHSPSMQVSYTSAGNNVNPGFRGGGGVSLTLGLQQ 527
++LDFS+ ++Y ++G + + GGGVSLTLGLQQ
Sbjct: 441 IELDFST---------NIAYGTSGGDHH---HHGGGVSLTLGLQQ 473
>dbj|BAA85436.1| EST AU056781(S20871) corresponds to a region of the predicted
gene.~similar to homeobox protein (U39944) [Oryza sativa
(japonica cultivar-group)] gi|25553531|dbj|BAC24807.1|
OSJNBa0004I20.2 [Oryza sativa (japonica cultivar-group)]
Length = 357
Score = 35.4 bits (80), Expect = 0.70
Identities = 25/68 (36%), Positives = 32/68 (46%), Gaps = 7/68 (10%)
Frame = -2
Query: 524 GGSGVVSLAFPPPQATQ---GSMYYTRDQVDQECPTGQFSLLDG----EGQNMPYRNLMG 366
G G VSL Q Q SM + Q + Q +++ E +PYRNLM
Sbjct: 287 GHGGAVSLTLGLQQQQQPFAASMMHQHQQHQHQHQQQQSFMVEAAEEEEDDVLPYRNLME 346
Query: 365 TQLLHDFA 342
+QLLHDFA
Sbjct: 347 SQLLHDFA 354
>pir||P1WLR1 L1 protein - rhesus papillomavirus (type 1)
Length = 354
Score = 33.1 bits (74), Expect = 3.5
Identities = 14/32 (43%), Positives = 20/32 (61%)
Frame = -3
Query: 409 WMVKDKTCPTGISWGHSCFMTLHDTTYSSGMT 314
W+ K + GI WG+ F+T+ DTT S+ MT
Sbjct: 162 WLQKAQGHNNGICWGNQVFLTVVDTTRSTNMT 193
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 566,367,885
Number of Sequences: 1393205
Number of extensions: 12434703
Number of successful extensions: 33423
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 31510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33350
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28855580904
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
