Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001955A_C01 KMC001955A_c01
(532 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ZP_00024902.1| hypothetical protein [Ralstonia metallidurans] 35 0.42
gb|EAA28264.1| predicted protein [Neurospora crassa] 31 8.0
>gb|ZP_00024902.1| hypothetical protein [Ralstonia metallidurans]
Length = 341
Score = 35.4 bits (80), Expect = 0.42
Identities = 29/80 (36%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Frame = +2
Query: 134 SNPLK-RLGWVPWLLRGGSKPVNPVEAPSGSFYP--VEAPSGILNAHGSLSTA-LYQRHS 301
+NP K LG++ G + P A +G+FY VE +GI + +G TA L +S
Sbjct: 246 ANPRKDTLGYI-----GATYQATPALALTGAFYADYVENKNGIADNNGRRYTAALIAEYS 300
Query: 302 LSPRIKAYGTI*LQKVTAAT 361
LS R + YG KV+ AT
Sbjct: 301 LSKRTQVYGAADFNKVSGAT 320
>gb|EAA28264.1| predicted protein [Neurospora crassa]
Length = 1023
Score = 31.2 bits (69), Expect = 8.0
Identities = 17/39 (43%), Positives = 21/39 (53%)
Frame = -2
Query: 267 PCAFRIPLGASTG*KLPLGASTGFTGFEPPRSSQGTHPS 151
P A RIPL +ST G+ST T EPP S+ P+
Sbjct: 50 PDAPRIPLPSSTAAAPTTGSSTSATAIEPPTSNAAPSPT 88
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 448,941,162
Number of Sequences: 1393205
Number of extensions: 9325775
Number of successful extensions: 20784
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 20275
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20773
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17596710992
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
