Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001953A_C01 KMC001953A_c01
(506 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_568150.1| putative protein; protein id: At5g05200.1, supp... 126 4e-35
dbj|BAB09696.1| contains similarity to unknown protein~gene_id:K... 126 4e-35
dbj|BAC20904.1| hypothetical protein~similar to Arabidopsis thal... 126 5e-33
ref|NP_712758.1| ABC1 family protein kinase [Leptospira interrog... 54 1e-06
ref|NP_302277.1| conserved hypothetical protein [Mycobacterium l... 35 0.38
>ref|NP_568150.1| putative protein; protein id: At5g05200.1, supported by cDNA:
gi_13605574, supported by cDNA: gi_14334951, supported
by cDNA: gi_16648992, supported by cDNA: gi_17104610,
supported by cDNA: gi_20259937 [Arabidopsis thaliana]
gi|13605575|gb|AAK32781.1|AF361613_1 AT5g05200/K2A11_7
[Arabidopsis thaliana] gi|14334952|gb|AAK59653.1|
unknown protein [Arabidopsis thaliana]
gi|16648993|gb|AAL24348.1| Unknown protein [Arabidopsis
thaliana] gi|17104611|gb|AAL34194.1| unknown protein
[Arabidopsis thaliana] gi|20259938|gb|AAM13316.1|
unknown protein [Arabidopsis thaliana]
gi|22137078|gb|AAM91384.1| At5g05200/K2A11_7
[Arabidopsis thaliana]
Length = 540
Score = 126 bits (316), Expect(2) = 4e-35
Identities = 66/80 (82%), Positives = 73/80 (90%), Gaps = 3/80 (3%)
Frame = -1
Query: 506 ARDLAKVFSSIKELDTEIVVAT---TSGPATAVAANIVVDERQMNALFLDVVRVSESYGL 336
A+DL K+FSSI+ELDTEIVVAT T+ TAVAAN+V+DERQMNALFLD+VRVSESYGL
Sbjct: 430 AKDLEKMFSSIQELDTEIVVATARGTNSDTTAVAANVVMDERQMNALFLDLVRVSESYGL 489
Query: 335 KFPREFALLLKQLLYFDRYT 276
KFPREFALLLKQLLYFDRYT
Sbjct: 490 KFPREFALLLKQLLYFDRYT 509
Score = 43.1 bits (100), Expect(2) = 4e-35
Identities = 20/23 (86%), Positives = 22/23 (94%)
Frame = -2
Query: 274 RLLAPNLNMLRDQRISITSNRRT 206
RLLAPNLNML+DQRISI SN+RT
Sbjct: 510 RLLAPNLNMLQDQRISIASNKRT 532
>dbj|BAB09696.1| contains similarity to unknown protein~gene_id:K2A11.7~pir||D70614
[Arabidopsis thaliana]
Length = 509
Score = 126 bits (316), Expect(2) = 4e-35
Identities = 66/80 (82%), Positives = 73/80 (90%), Gaps = 3/80 (3%)
Frame = -1
Query: 506 ARDLAKVFSSIKELDTEIVVAT---TSGPATAVAANIVVDERQMNALFLDVVRVSESYGL 336
A+DL K+FSSI+ELDTEIVVAT T+ TAVAAN+V+DERQMNALFLD+VRVSESYGL
Sbjct: 399 AKDLEKMFSSIQELDTEIVVATARGTNSDTTAVAANVVMDERQMNALFLDLVRVSESYGL 458
Query: 335 KFPREFALLLKQLLYFDRYT 276
KFPREFALLLKQLLYFDRYT
Sbjct: 459 KFPREFALLLKQLLYFDRYT 478
Score = 43.1 bits (100), Expect(2) = 4e-35
Identities = 20/23 (86%), Positives = 22/23 (94%)
Frame = -2
Query: 274 RLLAPNLNMLRDQRISITSNRRT 206
RLLAPNLNML+DQRISI SN+RT
Sbjct: 479 RLLAPNLNMLQDQRISIASNKRT 501
>dbj|BAC20904.1| hypothetical protein~similar to Arabidopsis thaliana chromosome 5,
At5g05200 [Oryza sativa (japonica cultivar-group)]
Length = 565
Score = 126 bits (316), Expect(2) = 5e-33
Identities = 63/78 (80%), Positives = 73/78 (92%), Gaps = 1/78 (1%)
Frame = -1
Query: 506 ARDLAKVFSSIKELDTEIVVATTSGP-ATAVAANIVVDERQMNALFLDVVRVSESYGLKF 330
A+DL K+FSSI++LDTE++VAT P ATAV+AN+VVDERQMNALFLD+VRVSESYGLKF
Sbjct: 458 AKDLEKIFSSIQDLDTEVIVATARTPDATAVSANVVVDERQMNALFLDLVRVSESYGLKF 517
Query: 329 PREFALLLKQLLYFDRYT 276
PREFALL+KQLLYFDRYT
Sbjct: 518 PREFALLMKQLLYFDRYT 535
Score = 36.2 bits (82), Expect(2) = 5e-33
Identities = 15/29 (51%), Positives = 24/29 (82%)
Frame = -2
Query: 274 RLLAPNLNMLRDQRISITSNRRTRY*ENF 188
RLLAP++NMLRD+R++I+S ++ R + F
Sbjct: 536 RLLAPSMNMLRDERVNISSRQQARRVDRF 564
>ref|NP_712758.1| ABC1 family protein kinase [Leptospira interrogans serovar lai str.
56601] gi|24196371|gb|AAN49776.1|AE011425_1 ABC1 family
protein kinase [Leptospira interrogans serovar lai str.
56601]
Length = 442
Score = 53.9 bits (128), Expect = 1e-06
Identities = 29/85 (34%), Positives = 48/85 (56%)
Frame = -1
Query: 506 ARDLAKVFSSIKELDTEIVVATTSGPATAVAANIVVDERQMNALFLDVVRVSESYGLKFP 327
++DL VFS + TE+V+ G ++ D++++NA+ + +S GLK P
Sbjct: 358 SKDLEIVFSKM----TEMVLKVQMGDLESL------DDKKLNAILFEFREISIQNGLKIP 407
Query: 326 REFALLLKQLLYFDRYTPVVGSQFE 252
+EF LL+KQ+LYFDRY + +
Sbjct: 408 KEFGLLIKQILYFDRYVKTMAPDID 432
>ref|NP_302277.1| conserved hypothetical protein [Mycobacterium leprae]
gi|25398614|pir||D87146 conserved hypothetical protein
ML1898 [imported] - Mycobacterium leprae
gi|13093567|emb|CAC30852.1| conserved hypothetical
protein [Mycobacterium leprae]
Length = 448
Score = 35.4 bits (80), Expect = 0.38
Identities = 17/47 (36%), Positives = 29/47 (61%)
Frame = -1
Query: 392 RQMNALFLDVVRVSESYGLKFPREFALLLKQLLYFDRYTPVVGSQFE 252
RQ++AL S++Y +K PRE L+ KQ LY +RY ++ +++
Sbjct: 381 RQLSAL-------SDAYNVKLPRELVLIGKQFLYVERYMKLLAPEWQ 420
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 419,113,562
Number of Sequences: 1393205
Number of extensions: 8810414
Number of successful extensions: 19826
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 19275
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19808
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15652649358
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
