Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001951A_C01 KMC001951A_c01
(484 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_564750.1| expressed protein; protein id: At1g59650.1, sup... 52 4e-06
ref|NP_172512.1| unknown protein; protein id: At1g10410.1, suppo... 50 1e-05
pir||A86238 protein F14N23.31 [imported] - Arabidopsis thaliana ... 50 1e-05
gb|AAK16169.1|AC079887_1 unknown protein 5'-partial [Oryza sativa] 48 5e-05
gb|AAK63926.1|AC084282_7 hypothetical protein [Oryza sativa (jap... 48 5e-05
>ref|NP_564750.1| expressed protein; protein id: At1g59650.1, supported by cDNA:
gi_6520232 [Arabidopsis thaliana]
gi|25369722|pir||T52427 hypothetical protein CW14
[imported] - Arabidopsis thaliana
gi|6520233|dbj|BAA87958.1| CW14 [Arabidopsis thaliana]
gi|8778748|gb|AAF79756.1|AC009317_15 T30E16.22
[Arabidopsis thaliana] gi|28393683|gb|AAO42254.1|
unknown protein [Arabidopsis thaliana]
gi|28973197|gb|AAO63923.1| unknown protein [Arabidopsis
thaliana]
Length = 492
Score = 51.6 bits (122), Expect = 4e-06
Identities = 22/33 (66%), Positives = 28/33 (84%)
Frame = -2
Query: 480 GLTIQGNKVEDLPEHLLCAIRLNKIDHSNFNQI 382
GLTIQGNK E+LPE +LC IRLN ID+ N++Q+
Sbjct: 453 GLTIQGNKPEELPEQILCCIRLNGIDYMNYHQL 485
>ref|NP_172512.1| unknown protein; protein id: At1g10410.1, supported by cDNA:
gi_20453051 [Arabidopsis thaliana]
gi|20453052|gb|AAM19771.1| At1g10410/F14N23_31
[Arabidopsis thaliana]
Length = 485
Score = 50.1 bits (118), Expect = 1e-05
Identities = 21/33 (63%), Positives = 27/33 (81%)
Frame = -2
Query: 480 GLTIQGNKVEDLPEHLLCAIRLNKIDHSNFNQI 382
GLTIQGNK E+LPE +LC +RLN ID N++Q+
Sbjct: 448 GLTIQGNKPEELPEQILCCVRLNGIDFMNYHQL 480
>pir||A86238 protein F14N23.31 [imported] - Arabidopsis thaliana
gi|4914345|gb|AAD32893.1|AC005489_31 F14N23.31
[Arabidopsis thaliana]
Length = 512
Score = 50.1 bits (118), Expect = 1e-05
Identities = 21/33 (63%), Positives = 27/33 (81%)
Frame = -2
Query: 480 GLTIQGNKVEDLPEHLLCAIRLNKIDHSNFNQI 382
GLTIQGNK E+LPE +LC +RLN ID N++Q+
Sbjct: 475 GLTIQGNKPEELPEQILCCVRLNGIDFMNYHQL 507
>gb|AAK16169.1|AC079887_1 unknown protein 5'-partial [Oryza sativa]
Length = 99
Score = 48.1 bits (113), Expect = 5e-05
Identities = 21/33 (63%), Positives = 26/33 (78%)
Frame = -2
Query: 480 GLTIQGNKVEDLPEHLLCAIRLNKIDHSNFNQI 382
GLTIQ K E+LPEH+LC +RLNKID ++ QI
Sbjct: 58 GLTIQAQKAEELPEHVLCCMRLNKIDFADSGQI 90
>gb|AAK63926.1|AC084282_7 hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 527
Score = 48.1 bits (113), Expect = 5e-05
Identities = 21/33 (63%), Positives = 26/33 (78%)
Frame = -2
Query: 480 GLTIQGNKVEDLPEHLLCAIRLNKIDHSNFNQI 382
GLTIQ K E+LPEH+LC +RLNKID ++ QI
Sbjct: 486 GLTIQAQKAEELPEHVLCCMRLNKIDFADSGQI 518
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 375,515,274
Number of Sequences: 1393205
Number of extensions: 7269777
Number of successful extensions: 13377
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 13155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13377
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13689082854
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
