Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001950A_C01 KMC001950A_c01
(580 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_703489.1| hypothetical protein [Plasmodium falciparum 3D7... 35 0.67
gb|EAA21279.1| chloroquine resistance marker protein [Plasmodium... 34 1.2
ref|ZP_00119119.1| hypothetical protein [Cytophaga hutchinsonii] 33 3.3
gb|AAC38977.1| unknown [Bodo saltans] 32 7.5
ref|NP_704307.1| hypothetical protein [Plasmodium falciparum 3D7... 32 7.5
>ref|NP_703489.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23504630|emb|CAD51509.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 199
Score = 35.0 bits (79), Expect = 0.67
Identities = 28/90 (31%), Positives = 45/90 (49%), Gaps = 7/90 (7%)
Frame = -2
Query: 255 VCRYFGIVSLFFLFF**LVAILCSLATLYKENKLLLRPMNINLSYY*KFFCFVCY----- 91
+ R+ +VS FL AI+ S TLY EN ++ + M+ ++ Y F + CY
Sbjct: 33 ILRFTFLVSFSFL------AIIVS--TLYVENNIINKRMHTHIYIYINIFLYFCYNFIII 84
Query: 90 --VKDIRWILNVILPIISYISLKVMNGTVI 7
+ I ++IL ++S+I L NGT I
Sbjct: 85 LELLQSFEITSLILSLLSFIILIRQNGTYI 114
>gb|EAA21279.1| chloroquine resistance marker protein [Plasmodium yoelii yoelii]
Length = 1955
Score = 34.3 bits (77), Expect = 1.2
Identities = 26/95 (27%), Positives = 49/95 (51%)
Frame = +3
Query: 60 LHLESNEYLLHNTQNKRTFNNSLNLCSSA*AIVYFLYIK*LENTVWRLITKRTKKTERQC 239
+H+ SN+ ++ +NK+T L+I+ +N + I K+ K TE +
Sbjct: 1504 VHICSNDLTANSRKNKKTKKGEKKK----------LFIE--QNKNRKQIDKKIK-TENEG 1550
Query: 240 QNNGKLIC*QEKNTRNINIQERMYIYLEFKLEEVF 344
NNG ++ +++N +N+ I E+ I FKL ++F
Sbjct: 1551 NNNGSMVLDEQENNKNVLINEKKTI---FKLFDIF 1582
>ref|ZP_00119119.1| hypothetical protein [Cytophaga hutchinsonii]
Length = 271
Score = 32.7 bits (73), Expect = 3.3
Identities = 30/103 (29%), Positives = 45/103 (43%), Gaps = 22/103 (21%)
Frame = -1
Query: 451 QISCDF*LNVLNLN-------HS*LNLI--IIIY----------FYILIVTISALNTSSN 329
Q+ C F L +L N HS +NL+ I IY F+ILI + LN+ N
Sbjct: 8 QLLCIFLLRMLGNNEPATIRKHSSINLMKNIFIYCFDKWWRPLLFFILIAGLLILNSELN 67
Query: 328 LN---SK*IYMRSCMLIFLVFFSCQQMSLPLFWHCLSVFFVLL 209
+ +Y+ + +I + C Q+ FW + F VLL
Sbjct: 68 IRFIKKPLLYLSNVSVIVIFISICYQLYKRQFWKGIYTFLVLL 110
>gb|AAC38977.1| unknown [Bodo saltans]
Length = 358
Score = 31.6 bits (70), Expect = 7.5
Identities = 29/105 (27%), Positives = 45/105 (42%)
Frame = -3
Query: 407 FMIKSNNYNLFLYSHSDYFCFKYLFQFKL*INIHALLYVNIPCIFLLSADEFAVILALSL 228
F+I N+NL L CF LF F + + + I +F F I + ++
Sbjct: 73 FLIVITNFNLCLSLTKTISCFIILFIFSNYSFLSNFINIGIASLFFF----FEYIASCNM 128
Query: 227 CFFCSFSN*SPYCVL*LLYIKKINYCLGR*T*I*AIIESSFVLCV 93
FC F + S Y V+ +Y N CL ++ SSF+ C+
Sbjct: 129 NIFCDFISHSSYLVV-FVY---NNACLN-------LMFSSFIFCL 162
>ref|NP_704307.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23499046|emb|CAD51126.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 643
Score = 31.6 bits (70), Expect = 7.5
Identities = 24/83 (28%), Positives = 41/83 (48%), Gaps = 1/83 (1%)
Frame = -3
Query: 410 SFMIKSNNYNLFLYSHSDYFCFKYLFQFKL*INIHALLYVNIPCIFLLSADEFAVI-LAL 234
+F+I++N +N F + F F +LF + I ++ C L++ F +I L L
Sbjct: 145 NFLIQNNIHNDFFRILTSSFFFVFLFFLHICFKIIMRDFMIFQCDLLMNEFGFLLIFLNL 204
Query: 233 SLCFFCSFSN*SPYCVL*LLYIK 165
S ++ +SN C+L LL K
Sbjct: 205 SDSYYLKYSNTLIICILRLLSFK 227
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 416,621,248
Number of Sequences: 1393205
Number of extensions: 7826133
Number of successful extensions: 16844
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 16174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16838
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21426319650
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
