Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001949A_C01 KMC001949A_c01
(550 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_565844.1| expressed protein; protein id: At2g36320.1, sup... 100 2e-20
ref|NP_190848.1| zinc finger - like protein; protein id: At3g528... 95 5e-19
gb|AAK68811.1| zinc finger-like protein [Arabidopsis thaliana] g... 91 9e-18
ref|NP_180326.1| putative zinc finger protein; protein id: At2g2... 74 2e-12
gb|AAF79653.1|AC025416_27 F5O11.17 [Arabidopsis thaliana] 69 3e-11
>ref|NP_565844.1| expressed protein; protein id: At2g36320.1, supported by cDNA:
24255. [Arabidopsis thaliana] gi|25408460|pir||C84779
hypothetical protein At2g36320 [imported] - Arabidopsis
thaliana gi|4510345|gb|AAD21434.1| expressed protein
[Arabidopsis thaliana] gi|21592464|gb|AAM64415.1| zinc
finger-like protein [Arabidopsis thaliana]
Length = 161
Score = 99.8 bits (247), Expect = 2e-20
Identities = 44/58 (75%), Positives = 51/58 (87%)
Frame = +2
Query: 302 MAEEHRCEAPEGHRLCVNNCGFSGSPATMDLCSKCYRDIRLKEQQEASTKSTIETALS 475
MAEEHRCE PEGHRLCVNNCGF GS ATM+LCS CY D+ LK+QQ+AS KST+E++LS
Sbjct: 1 MAEEHRCETPEGHRLCVNNCGFFGSSATMNLCSNCYGDLCLKQQQQASMKSTVESSLS 58
>ref|NP_190848.1| zinc finger - like protein; protein id: At3g52800.1, supported by
cDNA: gi_14596166 [Arabidopsis thaliana]
gi|11358932|pir||T49033 zinc finger-like protein -
Arabidopsis thaliana gi|7669954|emb|CAB89241.1| zinc
finger-like protein [Arabidopsis thaliana]
Length = 170
Score = 95.1 bits (235), Expect = 5e-19
Identities = 47/73 (64%), Positives = 59/73 (80%), Gaps = 1/73 (1%)
Frame = +2
Query: 302 MAEEHRCEAPEGHRLCVNNCGFSGSPATMDLCSKCYRDIRLKEQQEAST-KSTIETALSS 478
MAEEHRC+ PE +RLCVNNCGF GS ATM+LCS CY D+ LK+QQ++S+ KST+E++LS
Sbjct: 1 MAEEHRCQTPESNRLCVNNCGFLGSSATMNLCSNCYGDLCLKQQQQSSSIKSTVESSLSV 60
Query: 479 SSSVAKPPSSTSS 517
S PPSS+SS
Sbjct: 61 S-----PPSSSSS 68
>gb|AAK68811.1| zinc finger-like protein [Arabidopsis thaliana]
gi|18377546|gb|AAL66939.1| zinc finger-like protein
[Arabidopsis thaliana]
Length = 169
Score = 90.9 bits (224), Expect = 9e-18
Identities = 47/73 (64%), Positives = 59/73 (80%), Gaps = 1/73 (1%)
Frame = +2
Query: 302 MAEEHRCEAPEGHRLCVNNCGFSGSPATMDLCSKCYRDIRLKEQQEAST-KSTIETALSS 478
MAEEHRC+ PE +RLCVNNCGF GS ATM+LCS CY D+ LK+QQ++S+ KST+E++LS
Sbjct: 1 MAEEHRCQTPESNRLCVNNCGFLGS-ATMNLCSNCYGDLCLKQQQQSSSIKSTVESSLSV 59
Query: 479 SSSVAKPPSSTSS 517
S PPSS+SS
Sbjct: 60 S-----PPSSSSS 67
>ref|NP_180326.1| putative zinc finger protein; protein id: At2g27580.1, supported by
cDNA: 14203., supported by cDNA: gi_18253038
[Arabidopsis thaliana] gi|25407907|pir||D84674
hypothetical protein At2g27580 [imported] - Arabidopsis
thaliana gi|3860274|gb|AAC73042.1| putative zinc finger
protein [Arabidopsis thaliana]
gi|18253039|gb|AAL62446.1| putative zinc finger protein
[Arabidopsis thaliana] gi|20197663|gb|AAM15188.1|
putative zinc finger protein [Arabidopsis thaliana]
gi|21553397|gb|AAM62490.1| putative zinc finger protein
[Arabidopsis thaliana] gi|23198266|gb|AAN15660.1|
putative zinc finger protein [Arabidopsis thaliana]
Length = 163
Score = 73.6 bits (179), Expect = 2e-12
Identities = 35/76 (46%), Positives = 48/76 (63%)
Frame = +2
Query: 302 MAEEHRCEAPEGHRLCVNNCGFSGSPATMDLCSKCYRDIRLKEQQEASTKSTIETALSSS 481
MAEEHR + P RLC NNCGF GS AT +LCSKC+RD++ +EQ ++ K + +L++
Sbjct: 1 MAEEHRLQEP---RLCANNCGFFGSTATQNLCSKCFRDLQHQEQNSSTAKHALTQSLAAV 57
Query: 482 SSVAKPPSSTSSPSPA 529
+ A S P PA
Sbjct: 58 GAAASSSVSPPPPPPA 73
>gb|AAF79653.1|AC025416_27 F5O11.17 [Arabidopsis thaliana]
Length = 254
Score = 69.3 bits (168), Expect = 3e-11
Identities = 30/61 (49%), Positives = 41/61 (67%)
Frame = +2
Query: 326 APEGHRLCVNNCGFSGSPATMDLCSKCYRDIRLKEQQEASTKSTIETALSSSSSVAKPPS 505
+P +LCV CGF GSP+ M+LCSKCYRDIR E+Q AS K+ +E +L+ + +P
Sbjct: 98 SPSEPKLCVKGCGFFGSPSNMNLCSKCYRDIRATEEQTASAKAAVEKSLNPNKPKTQPQQ 157
Query: 506 S 508
S
Sbjct: 158 S 158
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 476,528,120
Number of Sequences: 1393205
Number of extensions: 10887173
Number of successful extensions: 71113
Number of sequences better than 10.0: 223
Number of HSP's better than 10.0 without gapping: 54645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69010
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18947112822
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
