Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001947A_C01 KMC001947A_c01
(823 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_568862.2| Expressed protein; protein id: At5g57655.2, sup... 154 2e-36
gb|AAM61519.1| xylose isomerase [Arabidopsis thaliana] 152 6e-36
sp|Q40082|XYLA_HORVU Xylose isomerase gi|1296809|emb|CAA64545.1|... 152 8e-36
dbj|BAC16651.1| putative xylose isomerase [Oryza sativa (japonic... 147 2e-34
gb|AAL83982.1| xylose isomerase [Oryza sativa] 142 8e-33
>ref|NP_568862.2| Expressed protein; protein id: At5g57655.2, supported by cDNA:
122798. [Arabidopsis thaliana]
gi|22531261|gb|AAM97134.1| expressed protein; supported
by full length cDNA: Ceres: 122798 [Arabidopsis
thaliana]
Length = 477
Score = 154 bits (388), Expect = 2e-36
Identities = 76/93 (81%), Positives = 87/93 (92%)
Frame = -1
Query: 823 RESTDVEDLFIAHIVGMDTMARGLRNAAKLIEDGSLAELVRKRYSSFDTEIGAQIEAGKA 644
RESTDVEDLFIAHI GMDTMARGLRNA K++E+GSL+ELVRKRY+++D+E+G QIE GKA
Sbjct: 385 RESTDVEDLFIAHISGMDTMARGLRNAVKILEEGSLSELVRKRYATWDSELGKQIEEGKA 444
Query: 643 DFELLEKKVKEWGEPKVASAKQELAEMIFQSAM 545
DFE LEKK KE+GEPKV+SAKQELAEMIFQSAM
Sbjct: 445 DFEYLEKKAKEFGEPKVSSAKQELAEMIFQSAM 477
>gb|AAM61519.1| xylose isomerase [Arabidopsis thaliana]
Length = 477
Score = 152 bits (384), Expect = 6e-36
Identities = 75/93 (80%), Positives = 87/93 (92%)
Frame = -1
Query: 823 RESTDVEDLFIAHIVGMDTMARGLRNAAKLIEDGSLAELVRKRYSSFDTEIGAQIEAGKA 644
RESTDVEDLFIAHI GMDTMARGLRNA K++E+GSL+ELVRKRY+++D+E+G QIE G+A
Sbjct: 385 RESTDVEDLFIAHISGMDTMARGLRNAVKILEEGSLSELVRKRYATWDSELGKQIEEGEA 444
Query: 643 DFELLEKKVKEWGEPKVASAKQELAEMIFQSAM 545
DFE LEKK KE+GEPKV+SAKQELAEMIFQSAM
Sbjct: 445 DFEYLEKKAKEFGEPKVSSAKQELAEMIFQSAM 477
>sp|Q40082|XYLA_HORVU Xylose isomerase gi|1296809|emb|CAA64545.1| xylose isomerase
[Hordeum vulgare subsp. vulgare]
Length = 479
Score = 152 bits (383), Expect = 8e-36
Identities = 77/93 (82%), Positives = 79/93 (84%)
Frame = -1
Query: 823 RESTDVEDLFIAHIVGMDTMARGLRNAAKLIEDGSLAELVRKRYSSFDTEIGAQIEAGKA 644
RESTDVEDLFIAHI GMDTMARG RN KLIEDGSL ELVRKRY SFDTEIGA IEAGK
Sbjct: 387 RESTDVEDLFIAHISGMDTMARGRRNVVKLIEDGSLDELVRKRYQSFDTEIGAMIEAGKG 446
Query: 643 DFELLEKKVKEWGEPKVASAKQELAEMIFQSAM 545
DFE LEKK EWGEP V S KQELAEM+FQSA+
Sbjct: 447 DFETLEKKALEWGEPTVPSGKQELAEMLFQSAL 479
>dbj|BAC16651.1| putative xylose isomerase [Oryza sativa (japonica cultivar-group)]
Length = 478
Score = 147 bits (371), Expect = 2e-34
Identities = 73/93 (78%), Positives = 81/93 (86%)
Frame = -1
Query: 823 RESTDVEDLFIAHIVGMDTMARGLRNAAKLIEDGSLAELVRKRYSSFDTEIGAQIEAGKA 644
RESTDVED+F+AHI GMDT+ARGLRN KLIEDGSL ELVRKRY SFD+EIGA IEAGK
Sbjct: 386 RESTDVEDMFLAHISGMDTLARGLRNVVKLIEDGSLDELVRKRYQSFDSEIGALIEAGKG 445
Query: 643 DFELLEKKVKEWGEPKVASAKQELAEMIFQSAM 545
DFE LEKKV EWGEP V S KQELAE++FQ+A+
Sbjct: 446 DFETLEKKVLEWGEPIVPSGKQELAEILFQAAL 478
>gb|AAL83982.1| xylose isomerase [Oryza sativa]
Length = 90
Score = 142 bits (357), Expect = 8e-33
Identities = 70/90 (77%), Positives = 78/90 (85%)
Frame = -1
Query: 814 TDVEDLFIAHIVGMDTMARGLRNAAKLIEDGSLAELVRKRYSSFDTEIGAQIEAGKADFE 635
TDVED+F+AHI GMDT+ARGLRN KLIEDGSL ELVRKRY SFD+EIGA IEAGK DFE
Sbjct: 1 TDVEDMFLAHISGMDTLARGLRNVVKLIEDGSLDELVRKRYQSFDSEIGALIEAGKGDFE 60
Query: 634 LLEKKVKEWGEPKVASAKQELAEMIFQSAM 545
LEKKV EWGEP V S KQELAE++FQ+A+
Sbjct: 61 TLEKKVLEWGEPIVPSGKQELAEILFQAAL 90
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 680,573,965
Number of Sequences: 1393205
Number of extensions: 14117571
Number of successful extensions: 34430
Number of sequences better than 10.0: 94
Number of HSP's better than 10.0 without gapping: 32960
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34348
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 42576939184
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
