Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001946A_C01 KMC001946A_c01
(552 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM14065.1| putative seryl-tRNA synthetase [Arabidopsis thali... 187 6e-47
pir||A86253 hypothetical protein [imported] - Arabidopsis thalia... 187 6e-47
ref|NP_172651.1| putative seryl-tRNA synthetase; protein id: At1... 187 6e-47
gb|AAL16281.1|AF428351_1 At1g11870/F12F1_29 [Arabidopsis thaliana] 184 6e-46
pir||T03949 serine-tRNA ligase (EC 6.1.1.11) serS - maize (fragm... 170 9e-42
>gb|AAM14065.1| putative seryl-tRNA synthetase [Arabidopsis thaliana]
gi|21689901|gb|AAM67511.1| putative seryl-tRNA
synthetase [Arabidopsis thaliana]
Length = 514
Score = 187 bits (476), Expect = 6e-47
Identities = 90/112 (80%), Positives = 96/112 (85%)
Frame = -1
Query: 549 LDMASEDLGAPAYRKSDVEAWMPGLERFGEISSASNCTDYQSRRLGIRYRPSEALAPGPN 370
LDMA+ DLGAPAYRK D+EAWMPGL RFGEISSASNCTDYQSRRLGIRYRPSE GP
Sbjct: 394 LDMATADLGAPAYRKFDIEAWMPGLGRFGEISSASNCTDYQSRRLGIRYRPSEPPQTGPK 453
Query: 369 KSKGNLAPPQFVHTLNATACAVPRMIICLLENYQQEDGSVLIPEPLTAFHGG 214
K K NL +FVHTLNATACAVPRM++CLLENYQQEDGSV+IPEPL F GG
Sbjct: 454 KGKANLPATKFVHTLNATACAVPRMMVCLLENYQQEDGSVVIPEPLRPFMGG 505
>pir||A86253 hypothetical protein [imported] - Arabidopsis thaliana
gi|3157938|gb|AAC17621.1| Similar to seryl-tRNA
synthetase gb|U10400 from S cerevisiae. EST gb|N96627
comes from this gene. [Arabidopsis thaliana]
Length = 573
Score = 187 bits (476), Expect = 6e-47
Identities = 90/112 (80%), Positives = 96/112 (85%)
Frame = -1
Query: 549 LDMASEDLGAPAYRKSDVEAWMPGLERFGEISSASNCTDYQSRRLGIRYRPSEALAPGPN 370
LDMA+ DLGAPAYRK D+EAWMPGL RFGEISSASNCTDYQSRRLGIRYRPSE GP
Sbjct: 413 LDMATADLGAPAYRKFDIEAWMPGLGRFGEISSASNCTDYQSRRLGIRYRPSEPPQTGPK 472
Query: 369 KSKGNLAPPQFVHTLNATACAVPRMIICLLENYQQEDGSVLIPEPLTAFHGG 214
K K NL +FVHTLNATACAVPRM++CLLENYQQEDGSV+IPEPL F GG
Sbjct: 473 KGKANLPATKFVHTLNATACAVPRMMVCLLENYQQEDGSVVIPEPLRPFMGG 524
>ref|NP_172651.1| putative seryl-tRNA synthetase; protein id: At1g11870.1, supported
by cDNA: gi_16226852 [Arabidopsis thaliana]
Length = 512
Score = 187 bits (476), Expect = 6e-47
Identities = 90/112 (80%), Positives = 96/112 (85%)
Frame = -1
Query: 549 LDMASEDLGAPAYRKSDVEAWMPGLERFGEISSASNCTDYQSRRLGIRYRPSEALAPGPN 370
LDMA+ DLGAPAYRK D+EAWMPGL RFGEISSASNCTDYQSRRLGIRYRPSE GP
Sbjct: 392 LDMATADLGAPAYRKFDIEAWMPGLGRFGEISSASNCTDYQSRRLGIRYRPSEPPQTGPK 451
Query: 369 KSKGNLAPPQFVHTLNATACAVPRMIICLLENYQQEDGSVLIPEPLTAFHGG 214
K K NL +FVHTLNATACAVPRM++CLLENYQQEDGSV+IPEPL F GG
Sbjct: 452 KGKANLPATKFVHTLNATACAVPRMMVCLLENYQQEDGSVVIPEPLRPFMGG 503
>gb|AAL16281.1|AF428351_1 At1g11870/F12F1_29 [Arabidopsis thaliana]
Length = 512
Score = 184 bits (467), Expect = 6e-46
Identities = 89/112 (79%), Positives = 95/112 (84%)
Frame = -1
Query: 549 LDMASEDLGAPAYRKSDVEAWMPGLERFGEISSASNCTDYQSRRLGIRYRPSEALAPGPN 370
LDMA+ DLGAPAYRK D+EAWMPGL RFGEISSASNCTD QSRRLGIRYRPSE GP
Sbjct: 392 LDMATADLGAPAYRKFDIEAWMPGLGRFGEISSASNCTDCQSRRLGIRYRPSEPPQTGPK 451
Query: 369 KSKGNLAPPQFVHTLNATACAVPRMIICLLENYQQEDGSVLIPEPLTAFHGG 214
K K NL +FVHTLNATACAVPRM++CLLENYQQEDGSV+IPEPL F GG
Sbjct: 452 KGKANLPATKFVHTLNATACAVPRMMVCLLENYQQEDGSVVIPEPLRPFMGG 503
>pir||T03949 serine-tRNA ligase (EC 6.1.1.11) serS - maize (fragment)
gi|3355717|emb|CAA73496.1| seryl-tRNA synthetase [Zea
mays]
Length = 489
Score = 170 bits (431), Expect = 9e-42
Identities = 82/115 (71%), Positives = 95/115 (82%), Gaps = 3/115 (2%)
Frame = -1
Query: 549 LDMASEDLGAPAYRKSDVEAWMPGLERFGEISSASNCTDYQSRRLGIRYRPSEALAPGPN 370
LDMA+ DLGAPAYRK D+EAWMPGLER+GEISSASNCTDYQSRRLGIRYRPS + P +
Sbjct: 366 LDMATGDLGAPAYRKFDIEAWMPGLERYGEISSASNCTDYQSRRLGIRYRPSPSEPPSTS 425
Query: 369 KSKGNLA---PPQFVHTLNATACAVPRMIICLLENYQQEDGSVLIPEPLTAFHGG 214
KG A P QFVHTLNATA AVPR+I+C+LEN+QQ DGS+++PEPL + GG
Sbjct: 426 TKKGKGAASGPTQFVHTLNATAVAVPRLIVCILENFQQGDGSIVVPEPLRPYMGG 480
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 489,054,178
Number of Sequences: 1393205
Number of extensions: 10587229
Number of successful extensions: 22647
Number of sequences better than 10.0: 219
Number of HSP's better than 10.0 without gapping: 21728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22424
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19234190289
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
