Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001940A_C01 KMC001940A_c01
(532 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_198815.1| N-acetylglucosaminyltransferase family (Core-2/... 64 1e-09
ref|NP_197009.1| N-acetylglucosaminyltransferase family (Core-2/... 60 1e-08
ref|NP_171851.1| N-acetylglucosaminyltransferase family (Core-2/... 60 2e-08
ref|NP_192243.1| N-acetylglucosaminyltransferase family (Core-2/... 57 1e-07
ref|NP_194478.1| N-acetylglucosaminyltransferase family (Core-2/... 52 4e-06
>ref|NP_198815.1| N-acetylglucosaminyltransferase family (Core-2/I-Branching enzyme
family); protein id: At5g39990.1 [Arabidopsis thaliana]
gi|10176991|dbj|BAB10223.1| glycosylation enzyme-like
protein [Arabidopsis thaliana]
Length = 447
Score = 63.5 bits (153), Expect = 1e-09
Identities = 29/72 (40%), Positives = 43/72 (59%)
Frame = -3
Query: 530 EPLLDKIDSEILGRNDHGYVPGKWFTQANPNITKSYSFVRNITELSPGPGAERLKRLING 351
+P+LDKID E+L R PG W ++ N + + + + + PGPGA RL+ L+
Sbjct: 375 DPVLDKIDDELLNRGPGMITPGGWCIGSHENGSDPCAVIGDTDVIRPGPGARRLENLVTS 434
Query: 350 LLSAENFKNNQC 315
LLS ENF++ QC
Sbjct: 435 LLSTENFRSKQC 446
>ref|NP_197009.1| N-acetylglucosaminyltransferase family (Core-2/I-Branching enzyme
family); protein id: At5g15050.1, supported by cDNA:
25053., supported by cDNA: gi_16209673 [Arabidopsis
thaliana] gi|11291967|pir||T51450 hypothetical protein
F2G14_170 - Arabidopsis thaliana
gi|9755672|emb|CAC01824.1| putative protein [Arabidopsis
thaliana] gi|16209674|gb|AAL14395.1| AT5g15050/F2G14_170
[Arabidopsis thaliana] gi|21554320|gb|AAM63425.1|
putative glycosylation enzyme [Arabidopsis thaliana]
gi|21700835|gb|AAM70541.1| AT5g15050/F2G14_170
[Arabidopsis thaliana]
Length = 434
Score = 60.5 bits (145), Expect = 1e-08
Identities = 30/72 (41%), Positives = 44/72 (60%)
Frame = -3
Query: 530 EPLLDKIDSEILGRNDHGYVPGKWFTQANPNITKSYSFVRNITELSPGPGAERLKRLING 351
EP+LDKIDSE+L R+ PG W N + + + + + + PG GA+R+++LI
Sbjct: 362 EPVLDKIDSELLFRSHGMVTPGGWCIGTRENGSDPCAVIGDTSVIKPGLGAKRIEKLITY 421
Query: 350 LLSAENFKNNQC 315
LLS ENF+ QC
Sbjct: 422 LLSTENFRPRQC 433
>ref|NP_171851.1| N-acetylglucosaminyltransferase family (Core-2/I-Branching enzyme
family); protein id: At1g03520.1, supported by cDNA:
gi_15292806, supported by cDNA: gi_20465790 [Arabidopsis
thaliana] gi|7485913|pir||T00906 hypothetical protein
F21B7.20 - Arabidopsis thaliana
gi|9280665|gb|AAF86534.1|AC002560_27 F21B7.14
[Arabidopsis thaliana] gi|15292807|gb|AAK92772.1|
putative glycosylation enzyme [Arabidopsis thaliana]
gi|20465791|gb|AAM20384.1| putative glycosylation enzyme
[Arabidopsis thaliana]
Length = 447
Score = 59.7 bits (143), Expect = 2e-08
Identities = 31/73 (42%), Positives = 44/73 (59%)
Frame = -3
Query: 530 EPLLDKIDSEILGRNDHGYVPGKWFTQANPNITKSYSFVRNITELSPGPGAERLKRLING 351
+P LDKID E+LGR H + PG W ++ N S + + L PGPG+ERL+ L+
Sbjct: 377 DPALDKIDKELLGRT-HRFAPGGWCVGSSANGNDQCSVQGDDSVLKPGPGSERLQELVQ- 434
Query: 350 LLSAENFKNNQCA 312
LS+E F+ QC+
Sbjct: 435 TLSSEEFRRKQCS 447
>ref|NP_192243.1| N-acetylglucosaminyltransferase family (Core-2/I-Branching enzyme
family); protein id: At4g03340.1 [Arabidopsis thaliana]
gi|25366911|pir||D85042 probable glycosylation enzyme
[imported] - Arabidopsis thaliana
gi|4262162|gb|AAD14462.1| putative glycosylation enzyme
[Arabidopsis thaliana] gi|7270204|emb|CAB77819.1|
putative glycosylation enzyme [Arabidopsis thaliana]
Length = 448
Score = 57.0 bits (136), Expect = 1e-07
Identities = 33/73 (45%), Positives = 44/73 (60%)
Frame = -3
Query: 530 EPLLDKIDSEILGRNDHGYVPGKWFTQANPNITKSYSFVRNITELSPGPGAERLKRLING 351
+P+LDKID E+LGR H + G W ++ N S + + L PGPGAERLK L+
Sbjct: 378 DPVLDKIDRELLGRT-HRFSSGAWCIGSSENGADPCSVRGDDSALKPGPGAERLKELLQT 436
Query: 350 LLSAENFKNNQCA 312
LLS E F+ QC+
Sbjct: 437 LLSDE-FRIKQCS 448
>ref|NP_194478.1| N-acetylglucosaminyltransferase family (Core-2/I-Branching enzyme
family); protein id: At4g27480.1 [Arabidopsis thaliana]
gi|7486258|pir||T08940 hypothetical protein F27G19.80 -
Arabidopsis thaliana gi|4972073|emb|CAB43880.1| putative
protein [Arabidopsis thaliana]
gi|7269602|emb|CAB81398.1| putative protein [Arabidopsis
thaliana]
Length = 384
Score = 52.0 bits (123), Expect = 4e-06
Identities = 26/72 (36%), Positives = 40/72 (55%)
Frame = -3
Query: 530 EPLLDKIDSEILGRNDHGYVPGKWFTQANPNITKSYSFVRNITELSPGPGAERLKRLING 351
+P LDKID E+LGR + + PG W P ++ V + +++ PGPGA RL+ L++
Sbjct: 317 DPALDKIDKELLGRGNGNFTPGGW-CAGEPKCSR----VGDPSKIKPGPGANRLRVLVSR 371
Query: 350 LLSAENFKNNQC 315
L+ QC
Sbjct: 372 LVLTSKLTQRQC 383
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 450,466,937
Number of Sequences: 1393205
Number of extensions: 9078465
Number of successful extensions: 20995
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 20559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20985
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17596710992
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
