Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001939A_C01 KMC001939A_c01
(635 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAG52091.1|AC012680_2 putative AP2 domain transcriptional reg... 72 8e-12
ref|NP_177931.1| AP2 domain protein RAP2.4; protein id: At1g7808... 72 8e-12
gb|AAK43967.1|AF370152_1 putative AP2 domain-containing protein ... 72 8e-12
gb|AAC49770.1| AP2 domain containing protein RAP2.4 [Arabidopsis... 72 8e-12
gb|AAF17691.1|AC009243_18 F28K19.29 [Arabidopsis thaliana] 72 8e-12
>gb|AAG52091.1|AC012680_2 putative AP2 domain transcriptional regulator, 5' partial; 1-558
[Arabidopsis thaliana]
Length = 185
Score = 71.6 bits (174), Expect = 8e-12
Identities = 43/99 (43%), Positives = 56/99 (56%), Gaps = 1/99 (1%)
Frame = -1
Query: 632 KKSKAASTASSKVVAPPEAPMTHKEENSVVVGGGDVKGSESTCKVESVVISESEPSSEGS 453
K +K++ KV +P + EENSV +GG S ++E E S+ GS
Sbjct: 101 KSTKSSKKREKKVSSPDLSEKVKAEENSVSIGG-------------SPPVTEFEESTAGS 147
Query: 452 SPLSDLTFGDVYE-PQWEGDSDNLNLFKYPSYEIDWDSL 339
SPLSDLTF D E PQW ++ +L KYPSYEIDWDS+
Sbjct: 148 SPLSDLTFADPEEPPQW---NETFSLEKYPSYEIDWDSI 183
>ref|NP_177931.1| AP2 domain protein RAP2.4; protein id: At1g78080.1, supported by
cDNA: gi_13877778 [Arabidopsis thaliana]
gi|23297619|gb|AAN12993.1| putative AP2 domain
containing protein [Arabidopsis thaliana]
Length = 334
Score = 71.6 bits (174), Expect = 8e-12
Identities = 43/99 (43%), Positives = 56/99 (56%), Gaps = 1/99 (1%)
Frame = -1
Query: 632 KKSKAASTASSKVVAPPEAPMTHKEENSVVVGGGDVKGSESTCKVESVVISESEPSSEGS 453
K +K++ KV +P + EENSV +GG S ++E E S+ GS
Sbjct: 250 KSTKSSKKREKKVSSPDLSEKVKAEENSVSIGG-------------SPPVTEFEESTAGS 296
Query: 452 SPLSDLTFGDVYE-PQWEGDSDNLNLFKYPSYEIDWDSL 339
SPLSDLTF D E PQW ++ +L KYPSYEIDWDS+
Sbjct: 297 SPLSDLTFADPEEPPQW---NETFSLEKYPSYEIDWDSI 332
>gb|AAK43967.1|AF370152_1 putative AP2 domain-containing protein [Arabidopsis thaliana]
Length = 334
Score = 71.6 bits (174), Expect = 8e-12
Identities = 43/99 (43%), Positives = 56/99 (56%), Gaps = 1/99 (1%)
Frame = -1
Query: 632 KKSKAASTASSKVVAPPEAPMTHKEENSVVVGGGDVKGSESTCKVESVVISESEPSSEGS 453
K +K++ KV +P + EENSV +GG S ++E E S+ GS
Sbjct: 250 KSTKSSKKREKKVSSPDLSEKVKAEENSVSIGG-------------SPPVTEFEESTAGS 296
Query: 452 SPLSDLTFGDVYE-PQWEGDSDNLNLFKYPSYEIDWDSL 339
SPLSDLTF D E PQW ++ +L KYPSYEIDWDS+
Sbjct: 297 SPLSDLTFADPEEPPQW---NETFSLEKYPSYEIDWDSI 332
>gb|AAC49770.1| AP2 domain containing protein RAP2.4 [Arabidopsis thaliana]
Length = 229
Score = 71.6 bits (174), Expect = 8e-12
Identities = 43/99 (43%), Positives = 56/99 (56%), Gaps = 1/99 (1%)
Frame = -1
Query: 632 KKSKAASTASSKVVAPPEAPMTHKEENSVVVGGGDVKGSESTCKVESVVISESEPSSEGS 453
K +K++ KV +P + EENSV +GG S ++E E S+ GS
Sbjct: 145 KSTKSSKKREKKVSSPDLSEKVKAEENSVSIGG-------------SPPVTEFEESTAGS 191
Query: 452 SPLSDLTFGDVYE-PQWEGDSDNLNLFKYPSYEIDWDSL 339
SPLSDLTF D E PQW ++ +L KYPSYEIDWDS+
Sbjct: 192 SPLSDLTFADPEEPPQW---NETFSLEKYPSYEIDWDSI 227
>gb|AAF17691.1|AC009243_18 F28K19.29 [Arabidopsis thaliana]
Length = 330
Score = 71.6 bits (174), Expect = 8e-12
Identities = 43/99 (43%), Positives = 56/99 (56%), Gaps = 1/99 (1%)
Frame = -1
Query: 632 KKSKAASTASSKVVAPPEAPMTHKEENSVVVGGGDVKGSESTCKVESVVISESEPSSEGS 453
K +K++ KV +P + EENSV +GG S ++E E S+ GS
Sbjct: 246 KSTKSSKKREKKVSSPDLSEKVKAEENSVSIGG-------------SPPVTEFEESTAGS 292
Query: 452 SPLSDLTFGDVYE-PQWEGDSDNLNLFKYPSYEIDWDSL 339
SPLSDLTF D E PQW ++ +L KYPSYEIDWDS+
Sbjct: 293 SPLSDLTFADPEEPPQW---NETFSLEKYPSYEIDWDSI 328
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 526,782,235
Number of Sequences: 1393205
Number of extensions: 11484562
Number of successful extensions: 50496
Number of sequences better than 10.0: 103
Number of HSP's better than 10.0 without gapping: 40975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49290
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26439068301
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
