Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001937A_C01 KMC001937A_c01
(550 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA95815.1| Similar to Arabidopsis thaliana chromosome II BA... 33 3.0
gb|AAO52401.1| similar to Homo sapiens (Human). High-risk human ... 32 6.6
ref|NP_521721.1| CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solan... 32 6.6
>dbj|BAA95815.1| Similar to Arabidopsis thaliana chromosome II BAC F13B15 genomic
sequence, putative non-LTR retroelement reverse
transcriptase. (AC006300) [Oryza sativa (japonica
cultivar-group)]
Length = 1285
Score = 32.7 bits (73), Expect = 3.0
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = -3
Query: 479 CYILFGRQGYKINSFLF*QPEYMVVFY 399
C++ +G +G KINS+L P Y +VFY
Sbjct: 1156 CHLTYGGRGIKINSYLSSAPMYAMVFY 1182
>gb|AAO52401.1| similar to Homo sapiens (Human). High-risk human papilloma viruses
E6 oncoproteins targeted protein E6TP1 alpha
[Dictyostelium discoideum]
Length = 855
Score = 31.6 bits (70), Expect = 6.6
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = -1
Query: 508 QQLSSKFKYAVIYCLAGKVTKSTVFCSSN 422
+Q FK+ ++YC G+V + ++FC+ N
Sbjct: 634 RQRVKSFKFGILYCAPGQVDEESMFCNQN 662
>ref|NP_521721.1| CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solanacearum]
gi|17430627|emb|CAD17311.1| CONSERVED HYPOTHETICAL
PROTEIN [Ralstonia solanacearum]
Length = 719
Score = 31.6 bits (70), Expect = 6.6
Identities = 19/67 (28%), Positives = 31/67 (45%)
Frame = +2
Query: 332 IKRARDEGGKRVKTSEYSES*RNKIQPYTQVARTENC*FCNLACQTVYNSVFEF*TKLLV 511
++ A DE KR K+SE + R +QP + FC A QT + + L+
Sbjct: 222 VRDALDEVMKRFKSSESPAAVRAGLQPIMPAVTVQQS-FCRTAMQTAHGIIISDRVGWLL 280
Query: 512 SINQWEG 532
+ +W+G
Sbjct: 281 MLAEWKG 287
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 431,005,867
Number of Sequences: 1393205
Number of extensions: 8460062
Number of successful extensions: 16886
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 16367
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16882
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18947112822
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
